Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48498 * 109.47060 * 240.00105 * 3 2 1 5 5 H 1.48494 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46941 * 120.00086 * 3 2 1 7 7 C 1.37878 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47054 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46781 * 179.69954 * 11 10 9 13 13 C 1.46891 * 111.00487 * 288.42804 * 12 11 10 14 14 C 1.53007 * 109.47293 * 169.99916 * 13 12 11 15 15 C 1.52998 * 117.50000 * 243.62159 * 14 13 12 16 16 C 1.52999 * 60.00227 * 252.51394 * 15 14 13 17 17 C 1.46907 * 111.00082 * 164.47342 * 12 11 10 18 18 C 1.53003 * 117.49620 * 6.34135 * 17 12 11 19 19 C 1.53003 * 117.49650 * 297.68718 * 17 12 11 20 20 H 0.97002 * 120.00231 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47627 * 60.00289 * 9 7 2 22 22 H 1.09004 * 109.47234 * 299.99758 * 9 7 2 23 23 H 1.09004 * 109.46499 * 299.99719 * 10 9 7 24 24 H 1.08995 * 109.47062 * 59.99454 * 10 9 7 25 25 H 1.08997 * 109.47637 * 299.70323 * 11 10 9 26 26 H 1.09005 * 109.47105 * 59.70799 * 11 10 9 27 27 H 1.09005 * 109.47401 * 289.99920 * 13 12 11 28 28 H 1.09004 * 109.47283 * 49.99999 * 13 12 11 29 29 H 1.08993 * 115.54813 * 29.33480 * 14 13 12 30 30 H 1.09007 * 117.49634 * 0.02562 * 15 14 13 31 31 H 1.08998 * 117.49672 * 145.02182 * 15 14 13 32 32 H 1.09004 * 117.49827 * 252.51359 * 16 15 14 33 33 H 1.08999 * 117.52043 * 107.48187 * 16 15 14 34 34 H 1.08996 * 115.55243 * 152.00812 * 17 12 11 35 35 H 1.09007 * 117.49991 * 0.02562 * 18 17 12 36 36 H 1.08997 * 117.49794 * 145.01920 * 18 17 12 37 37 H 1.09006 * 117.49246 * 214.97521 * 19 17 12 38 38 H 1.09002 * 117.50069 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 7 2.4348 -6.1036 -0.0072 13 6 3.1001 -6.2190 -1.3117 14 6 4.2540 -7.2186 -1.2091 15 6 5.6706 -6.6882 -1.4389 16 6 5.0023 -7.5683 -2.4970 17 6 1.7744 -7.3633 0.3603 18 6 0.2539 -7.3407 0.5292 19 6 1.1592 -7.4569 1.7580 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8897 23 1 2.8718 -3.6043 -0.8906 24 1 2.8719 -3.6043 0.8894 25 1 0.8579 -5.0469 0.8929 26 1 0.8493 -5.0428 -0.8870 27 1 2.3833 -6.5667 -2.0557 28 1 3.4886 -5.2449 -1.6089 29 1 4.1261 -8.0100 -0.4706 30 1 5.7806 -5.6271 -1.6627 31 1 6.4751 -7.1306 -0.8513 32 1 5.3671 -8.5897 -2.6056 33 1 4.6723 -7.0866 -3.4175 34 1 2.2212 -8.2668 -0.0545 35 1 -0.2564 -6.3911 0.3674 36 1 -0.2995 -8.2294 0.2260 37 1 1.2011 -8.4222 2.2627 38 1 1.2449 -6.5839 2.4051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070650067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = 25.366186 kcal Electronic energy + Delta-G solvation = -15236.804965 eV Core-core repulsion = 12886.791771 eV Total energy + Delta-G solvation = -2350.013195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24929 -37.88540 -36.22399 -34.67947 -32.78219 -28.97206 -26.79665 -24.78252 -23.30860 -23.16405 -22.23708 -21.84556 -20.20935 -18.46400 -17.62367 -16.87744 -16.40106 -16.10613 -15.70157 -15.07354 -14.62077 -14.30520 -14.19831 -13.69860 -13.54444 -13.12106 -12.75123 -12.54664 -12.46188 -12.33742 -12.17852 -12.01400 -11.79764 -11.50350 -11.40916 -11.22150 -11.10555 -11.05018 -10.78217 -10.55518 -9.05062 -8.20960 -6.32348 1.39108 1.42556 1.50558 2.39999 2.62348 2.98062 3.11935 3.19145 3.72908 3.94818 3.97604 4.10054 4.13245 4.14935 4.19503 4.42469 4.50792 4.66175 4.71400 4.72750 4.79869 4.83004 4.84546 4.97566 5.04889 5.08307 5.11865 5.20395 5.27013 5.31117 5.37990 5.49965 5.71727 5.83722 6.07555 6.23846 6.26441 6.83732 7.36869 8.90854 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.006056 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.787502 B = 4622.606066 C = 5482.700740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.067 3.933 12 N -0.512 5.512 13 C 0.085 3.915 14 C -0.150 4.150 15 C -0.182 4.182 16 C -0.169 4.169 17 C 0.015 3.985 18 C -0.223 4.223 19 C -0.169 4.169 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.009 1.009 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -17.170 -1.974 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.233 5.233 13 C -0.043 4.043 14 C -0.169 4.169 15 C -0.219 4.219 16 C -0.206 4.206 17 C -0.094 4.094 18 C -0.262 4.262 19 C -0.207 4.207 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.009 0.991 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.889 -16.947 -1.633 18.367 hybrid contribution -0.668 1.080 -0.490 1.361 sum 6.221 -15.867 -2.123 17.175 Atomic orbital electron populations 1.70087 1.07809 1.27878 1.51571 1.25985 0.95783 1.03363 0.94607 0.85499 0.78307 0.78026 0.79217 1.19131 1.20620 1.19187 1.21641 0.93467 0.92389 1.50759 0.92382 1.18953 0.94336 0.93084 0.94641 1.21384 0.97913 0.92799 1.00439 1.22091 0.93647 0.90358 0.99967 1.61821 1.29316 1.02592 1.29592 1.21708 0.94890 0.98721 0.88937 1.22204 0.92400 1.01235 1.01021 1.23042 0.95764 0.99705 1.03399 1.23046 1.03354 1.01342 0.92881 1.22820 0.92306 0.93584 1.00663 1.23599 0.94598 1.03551 1.04433 1.23107 1.03067 1.03569 0.90934 0.92715 0.99185 0.99092 0.93383 0.93236 0.91315 0.95534 0.94395 0.91701 0.86935 0.89814 0.87923 0.87058 0.88903 0.84652 0.90014 0.87104 0.86282 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.09 -3.84 5.21 30.60 0.16 -3.68 16 11 C 0.07 2.45 3.61 86.30 0.31 2.76 16 12 N -0.51 -15.60 4.67 -870.97 -4.07 -19.66 16 13 C 0.08 2.35 5.08 86.31 0.44 2.78 16 14 C -0.15 -3.32 5.53 -10.79 -0.06 -3.38 16 15 C -0.18 -3.83 10.18 30.59 0.31 -3.52 16 16 C -0.17 -3.06 10.25 30.60 0.31 -2.74 16 17 C 0.02 0.38 5.65 44.92 0.25 0.63 16 18 C -0.22 -5.41 9.53 30.62 0.29 -5.12 16 19 C -0.17 -3.97 9.97 30.62 0.31 -3.66 16 20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 22 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 23 H 0.05 2.07 6.57 -2.38 -0.02 2.05 16 24 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 2.56 5.85 -2.39 -0.01 2.55 16 26 H 0.03 0.99 7.89 -2.38 -0.02 0.97 16 27 H 0.04 1.02 8.12 -2.38 -0.02 1.00 16 28 H 0.06 2.02 6.11 -2.38 -0.01 2.01 16 29 H 0.11 2.33 6.74 -2.39 -0.02 2.31 16 30 H 0.08 1.96 8.03 -2.38 -0.02 1.94 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.14 2.76 6.68 -2.39 -0.02 2.74 16 35 H 0.08 2.35 5.92 -2.38 -0.01 2.34 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.08 2.18 7.71 -2.39 -0.02 2.16 16 Total: -1.00 -64.40 304.17 2.42 -61.98 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.01 Total: 13.80 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 3.17 Total: -45.62 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -3.78 Total: -77.28 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.40 2.42 -61.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.347 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds