Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39816 * 2 1 4 4 C 1.34668 * 106.81452 * 180.25755 * 3 2 1 5 5 N 1.34121 * 108.02159 * 359.74130 * 4 3 2 6 6 C 1.30502 * 109.26042 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.65221 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.02669 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46700 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00228 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46757 * 60.00769 * 16 14 12 18 18 H 1.48495 * 109.46824 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47105 * 300.00477 * 16 14 12 20 20 H 1.08999 * 109.47176 * 270.18557 * 1 2 3 21 21 H 1.09001 * 109.46961 * 30.18549 * 1 2 3 22 22 H 1.08997 * 109.47316 * 150.18946 * 1 2 3 23 23 H 1.07998 * 126.58948 * 359.97438 * 3 2 1 24 24 H 1.08003 * 125.98696 * 179.72867 * 4 3 2 25 25 H 1.09001 * 109.47558 * 330.02832 * 7 6 5 26 26 H 1.08998 * 109.47216 * 210.02495 * 7 6 5 27 27 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 28 28 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 29 29 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 30 30 H 1.08995 * 109.46615 * 299.99641 * 10 9 8 31 31 H 1.08996 * 109.46939 * 60.00272 * 10 9 8 32 32 H 1.08993 * 109.47740 * 299.99810 * 11 10 9 33 33 H 1.09005 * 109.47573 * 59.99976 * 11 10 9 34 34 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0058 5 7 3.5095 -0.6903 -0.0035 6 6 2.2663 -1.0870 0.0030 7 6 1.8018 -2.5206 0.0069 8 7 1.6569 -2.9846 1.3932 9 6 1.2050 -4.3817 1.4362 10 6 1.0655 -4.8280 2.8930 11 6 0.5942 -6.2829 2.9378 12 6 0.4574 -6.7226 4.3727 13 1 0.6835 -6.0332 5.1727 14 6 0.0425 -8.0048 4.6642 15 7 -0.2333 -8.8442 3.6901 16 14 -0.1278 -8.5497 6.4429 17 1 -1.1200 -7.6862 7.1322 18 1 -0.5851 -9.9618 6.4863 19 1 1.1867 -8.4343 7.1240 20 1 -0.3633 0.0033 1.0276 21 1 -0.3633 0.8883 -0.5167 22 1 -0.3634 -0.8916 -0.5109 23 1 1.9613 2.1345 -0.0004 24 1 4.4369 1.2611 -0.0115 25 1 2.5342 -3.1413 -0.5093 26 1 0.8409 -2.5926 -0.5026 27 1 1.0316 -2.3859 1.9114 28 1 0.2400 -4.4670 0.9365 29 1 1.9336 -5.0150 0.9300 30 1 2.0302 -4.7426 3.3931 31 1 0.3367 -4.1947 3.3988 32 1 -0.3705 -6.3679 2.4378 33 1 1.3227 -6.9166 2.4318 34 1 -0.5248 -9.7464 3.8951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070825094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = 26.670797 kcal Electronic energy + Delta-G solvation = -14468.268984 eV Core-core repulsion = 12014.772018 eV Total energy + Delta-G solvation = -2453.496966 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.99320 -37.86185 -35.55241 -34.89312 -33.41328 -30.90146 -28.45414 -27.75796 -25.99504 -23.89112 -22.32000 -22.02900 -20.68825 -18.49319 -17.94671 -17.02386 -16.77906 -16.49156 -15.60671 -15.47967 -15.30233 -14.48454 -14.36556 -14.16060 -13.78456 -13.54198 -13.43944 -13.14463 -13.10474 -12.63823 -12.46583 -12.28260 -11.53469 -11.39808 -11.14328 -10.90650 -10.54656 -10.53725 -9.51635 -9.28676 -8.19207 -6.30084 1.06079 1.40693 1.43926 1.51814 1.90712 2.14997 2.42060 3.13894 3.23780 3.53144 3.90336 3.95273 4.23334 4.23895 4.34582 4.41940 4.54564 4.60904 4.68635 4.72073 4.85522 4.97145 5.09966 5.24116 5.33906 5.52317 5.76110 5.85740 5.86833 5.92443 6.24668 6.28477 6.35876 6.86519 7.20136 7.39001 8.92429 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.059558 B = 0.003989 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.020425 B = 7017.062690 C = 7027.110261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.457 5.457 3 C -0.044 4.044 4 C -0.063 4.063 5 N -0.522 5.522 6 C 0.191 3.809 7 C 0.149 3.851 8 N -0.689 5.689 9 C 0.075 3.925 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.269 1.269 20 H 0.086 0.914 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.213 0.787 24 H 0.183 0.817 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.342 0.658 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.052 0.948 32 H -0.004 1.004 33 H -0.008 1.008 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 20.270 -8.693 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.140 5.140 3 C -0.178 4.178 4 C -0.211 4.211 5 N -0.242 5.242 6 C -0.072 4.072 7 C 0.019 3.981 8 N -0.321 5.321 9 C -0.054 4.054 10 C -0.131 4.131 11 C -0.012 4.012 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.194 1.194 20 H 0.105 0.895 21 H 0.132 0.868 22 H 0.111 0.889 23 H 0.229 0.771 24 H 0.201 0.799 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.010 0.990 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.125 19.418 -8.685 21.272 hybrid contribution -1.512 -0.002 0.529 1.602 sum -1.386 19.416 -8.156 21.105 Atomic orbital electron populations 1.22395 0.74408 1.06357 1.04946 1.45587 1.08980 1.06086 1.53298 1.23282 0.90644 0.93793 1.10077 1.22774 0.98300 0.90669 1.09330 1.70170 1.20215 1.13674 1.20159 1.23119 0.85989 0.91217 1.06882 1.20149 1.00716 0.86657 0.90615 1.60354 1.55754 1.03437 1.12572 1.21860 0.98259 0.88074 0.97193 1.21372 1.00094 0.96503 0.95108 1.18967 0.94677 0.92091 0.95500 1.21679 1.45024 0.97850 0.93791 0.92400 1.25969 0.94935 0.96841 1.02018 1.70082 1.46890 1.06488 1.33860 0.85514 0.78927 0.77258 0.79433 1.19046 1.20717 1.19408 0.89503 0.86788 0.88919 0.77066 0.79947 0.89079 0.91515 0.83965 0.94460 0.91699 0.93438 0.92916 0.98535 0.98998 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.97 127.77 1.40 2.02 16 2 N -0.46 -8.78 3.15 -537.61 -1.69 -10.48 16 3 C -0.04 -0.79 11.58 83.09 0.96 0.18 16 4 C -0.06 -1.50 11.87 83.52 0.99 -0.51 16 5 N -0.52 -16.24 11.25 -188.14 -2.12 -18.36 16 6 C 0.19 5.04 7.42 138.13 1.02 6.06 16 7 C 0.15 3.77 5.99 85.55 0.51 4.28 16 8 N -0.69 -20.34 6.49 -517.92 -3.36 -23.70 16 9 C 0.07 2.53 5.69 86.30 0.49 3.02 16 10 C -0.09 -3.88 5.41 30.59 0.17 -3.71 16 11 C 0.03 1.35 4.97 29.85 0.15 1.49 16 12 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 16 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.09 0.87 7.04 -2.39 -0.02 0.85 16 23 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 24 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.07 1.33 7.06 -2.39 -0.02 1.31 16 27 H 0.34 9.21 8.72 -89.69 -0.78 8.43 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -72.95 291.77 1.82 -71.13 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.29 Total: 9.63 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 6.39 Total: -18.05 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -6.89 Total: -109.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.95 1.82 -71.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070825094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.796 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds