Wall clock time and date at job start Mon Mar 30 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48506 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47232 * 119.99729 * 3 2 1 6 6 H 1.48496 * 109.47509 * 240.00023 * 3 2 1 7 7 C 1.37882 * 119.99628 * 180.27634 * 2 1 3 8 8 H 1.08007 * 119.99755 * 179.72632 * 7 2 1 9 9 C 1.50694 * 120.00204 * 359.72398 * 7 2 1 10 10 C 1.52999 * 109.47050 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00067 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47045 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.36263 * 304.23782 * 13 12 11 15 15 C 1.54580 * 110.40498 * 66.56792 * 13 12 11 16 16 C 1.55927 * 104.64527 * 118.78959 * 15 13 12 17 17 H 1.09006 * 115.92077 * 160.84280 * 16 15 13 18 18 C 1.55933 * 104.49865 * 289.71962 * 16 15 13 19 19 C 1.54576 * 104.63861 * 70.27990 * 18 16 15 20 20 C 1.55936 * 110.40246 * 181.91345 * 13 12 11 21 21 H 1.08998 * 115.92022 * 80.36380 * 20 13 12 22 22 C 1.56946 * 100.65034 * 33.77925 * 16 15 13 23 23 H 0.96999 * 120.00136 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47607 * 300.00060 * 9 7 2 25 25 H 1.09004 * 109.47117 * 60.00228 * 9 7 2 26 26 H 1.09005 * 109.47578 * 299.99933 * 10 9 7 27 27 H 1.09000 * 109.47197 * 60.00609 * 10 9 7 28 28 H 1.00903 * 111.00045 * 56.05028 * 11 10 9 29 29 H 1.09003 * 109.47116 * 299.99819 * 12 11 10 30 30 H 1.09001 * 109.47523 * 59.99549 * 12 11 10 31 31 H 1.09005 * 110.40133 * 237.58359 * 15 13 12 32 32 H 1.09001 * 110.40340 * 359.88047 * 15 13 12 33 33 H 1.08995 * 110.40017 * 189.06890 * 18 16 15 34 34 H 1.08996 * 110.39941 * 311.48984 * 18 16 15 35 35 H 1.08998 * 110.40313 * 118.79488 * 19 18 16 36 36 H 1.09005 * 110.40047 * 241.20774 * 19 18 16 37 37 H 1.09002 * 112.02659 * 63.17328 * 22 16 15 38 38 H 1.09008 * 112.02561 * 189.69070 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0044 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0102 9 6 1.2509 -2.4992 -0.0058 10 6 2.2451 -3.6621 -0.0134 11 7 1.5106 -4.9343 -0.0140 12 6 2.4350 -6.0759 -0.0206 13 6 1.6349 -7.3800 -0.0217 14 1 0.9495 -7.4051 0.8254 15 6 0.8574 -7.5341 -1.3488 16 6 1.4218 -8.8400 -1.9871 17 1 0.7997 -9.3036 -2.7527 18 6 2.8723 -8.4671 -2.4211 19 6 3.6498 -8.3131 -1.0941 20 6 2.5959 -8.6074 0.0201 21 1 2.9945 -8.8672 1.0007 22 6 1.7134 -9.6894 -0.6999 23 1 -0.4850 -0.8400 0.0004 24 1 0.6280 -2.5591 0.8866 25 1 0.6206 -2.5548 -0.8933 26 1 2.8678 -3.6021 -0.9061 27 1 2.8758 -3.6067 0.8740 28 1 0.8709 -4.9821 -0.7929 29 1 3.0596 -6.0325 -0.9129 30 1 3.0665 -6.0374 0.8670 31 1 -0.2102 -7.6369 -1.1540 32 1 1.0434 -6.6798 -1.9997 33 1 3.3052 -9.2647 -3.0248 34 1 2.8738 -7.5276 -2.9737 35 1 4.4650 -9.0349 -1.0453 36 1 4.0337 -7.2977 -0.9942 37 1 0.8039 -9.9106 -0.1413 38 1 2.2787 -10.5936 -0.9262 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082527926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:27 Heat of formation + Delta-G solvation = -20.477744 kcal Electronic energy + Delta-G solvation = -15410.904916 eV Core-core repulsion = 13058.903779 eV Total energy + Delta-G solvation = -2352.001137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50464 -35.90132 -33.31546 -30.96283 -29.89589 -28.82333 -27.49807 -24.31668 -22.95300 -21.45705 -20.93593 -19.97762 -18.25932 -16.71381 -16.47496 -15.65760 -15.47327 -14.08287 -13.84885 -13.69362 -13.15554 -12.96889 -12.60305 -12.11805 -12.02558 -11.62186 -11.47485 -11.37110 -11.16538 -11.01220 -10.84701 -10.73744 -10.50675 -10.33939 -10.10191 -10.03841 -9.87978 -9.64545 -8.54695 -8.29427 -7.81255 -6.33136 -4.01720 3.45614 3.48036 3.66723 4.31783 4.40198 4.43809 4.56568 4.82402 5.07854 5.12021 5.23551 5.29876 5.36798 5.39952 5.44910 5.46143 5.58517 5.69176 5.78558 5.82863 5.95512 5.99331 6.05735 6.08327 6.16613 6.24657 6.27544 6.30790 6.32740 6.50232 6.86237 7.30951 7.53849 7.73795 7.92201 8.28238 8.49657 8.92081 9.70818 11.08032 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060864 B = 0.004623 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.931562 B = 6055.241827 C = 6169.802489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.073 3.927 11 N -0.694 5.694 12 C 0.062 3.938 13 C -0.086 4.086 14 H 0.078 0.922 15 C -0.117 4.117 16 C -0.106 4.106 17 H 0.094 0.906 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.099 4.099 21 H 0.096 0.904 22 C -0.122 4.122 23 H 0.269 0.731 24 H 0.016 0.984 25 H 0.004 0.996 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.334 0.666 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -19.017 -2.983 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.055 4.055 11 N -0.325 5.325 12 C -0.067 4.067 13 C -0.105 4.105 14 H 0.097 0.903 15 C -0.154 4.154 16 C -0.124 4.124 17 H 0.112 0.888 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.117 4.117 21 H 0.114 0.886 22 C -0.159 4.159 23 H 0.080 0.920 24 H 0.034 0.966 25 H 0.022 0.978 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.486 -17.344 -2.301 18.062 hybrid contribution 0.603 -1.613 -0.940 1.962 sum 5.089 -18.957 -3.240 19.894 Atomic orbital electron populations 1.70765 1.06871 1.30685 1.46559 1.25845 0.96562 1.02672 0.93796 0.83538 0.74866 0.75335 0.76462 1.20739 1.21443 1.21523 1.22003 0.94214 0.92052 1.55926 0.93461 1.19196 0.94683 0.92288 0.96359 1.21992 0.96638 0.88197 0.98698 1.60592 1.19864 1.02219 1.49866 1.22120 0.94481 0.90112 1.00019 1.22194 0.96815 0.93481 0.97986 0.90337 1.22686 0.99395 0.96933 0.96406 1.23564 0.96126 0.95999 0.96733 0.88810 1.22595 0.95207 1.00910 0.97061 1.22837 0.97472 1.02065 0.94526 1.23628 0.95534 0.94944 0.97635 0.88562 1.23549 0.99240 0.96976 0.96147 0.92019 0.96557 0.97822 0.96695 0.92293 0.84870 0.95121 0.91659 0.91807 0.91874 0.92289 0.91944 0.92354 0.90697 0.91399 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.65 55.43 0.76 -27.91 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.76 9.11 -34.44 -0.31 -18.08 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 9 C 0.01 0.33 4.54 -27.89 -0.13 0.20 16 10 C 0.07 1.61 5.62 -3.82 -0.02 1.59 16 11 N -0.69 -12.86 6.50 -113.78 -0.74 -13.60 16 12 C 0.06 0.93 4.23 -3.83 -0.02 0.91 16 13 C -0.09 -1.07 2.94 -88.22 -0.26 -1.33 16 14 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.37 5.35 -24.34 -0.13 -1.50 16 16 C -0.11 -1.06 5.19 -85.35 -0.44 -1.50 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.12 -1.23 6.21 -24.34 -0.15 -1.38 16 19 C -0.13 -1.38 5.86 -24.21 -0.14 -1.52 16 20 C -0.10 -1.03 4.96 -85.14 -0.42 -1.46 16 21 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 22 C -0.12 -1.15 6.42 -22.38 -0.14 -1.29 16 23 H 0.27 8.47 7.22 -40.82 -0.29 8.17 16 24 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 25 H 0.00 0.10 8.00 -51.93 -0.42 -0.32 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.33 6.00 7.44 -39.29 -0.29 5.70 16 29 H 0.03 0.46 5.93 -51.93 -0.31 0.15 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 6.67 -51.93 -0.35 0.46 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.87 5.34 -51.93 -0.28 0.59 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -30.79 291.04 -9.56 -40.35 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.61 Total: 1.07 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.27 Total: -25.01 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.02 Total: -41.52 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.79 -9.56 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082527926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.873 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds