Wall clock time and date at job start Mon Mar 30 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48506 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47232 * 119.99729 * 3 2 1 6 6 H 1.48496 * 109.47509 * 240.00023 * 3 2 1 7 7 C 1.37882 * 119.99628 * 180.27634 * 2 1 3 8 8 H 1.08007 * 119.99755 * 179.72632 * 7 2 1 9 9 C 1.50694 * 120.00204 * 359.72398 * 7 2 1 10 10 C 1.52999 * 109.47050 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00067 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47045 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.36263 * 304.23782 * 13 12 11 15 15 C 1.54580 * 110.40498 * 66.56792 * 13 12 11 16 16 C 1.55927 * 104.64527 * 118.78959 * 15 13 12 17 17 H 1.09006 * 115.92077 * 160.84280 * 16 15 13 18 18 C 1.55933 * 104.49865 * 289.71962 * 16 15 13 19 19 C 1.54576 * 104.63861 * 70.27990 * 18 16 15 20 20 C 1.55936 * 110.40246 * 181.91345 * 13 12 11 21 21 H 1.08998 * 115.92022 * 80.36380 * 20 13 12 22 22 C 1.56946 * 100.65034 * 33.77925 * 16 15 13 23 23 H 0.96999 * 120.00136 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47607 * 300.00060 * 9 7 2 25 25 H 1.09004 * 109.47117 * 60.00228 * 9 7 2 26 26 H 1.09005 * 109.47578 * 299.99933 * 10 9 7 27 27 H 1.09000 * 109.47197 * 60.00609 * 10 9 7 28 28 H 1.00903 * 111.00045 * 56.05028 * 11 10 9 29 29 H 1.09003 * 109.47116 * 299.99819 * 12 11 10 30 30 H 1.09001 * 109.47523 * 59.99549 * 12 11 10 31 31 H 1.09005 * 110.40133 * 237.58359 * 15 13 12 32 32 H 1.09001 * 110.40340 * 359.88047 * 15 13 12 33 33 H 1.08995 * 110.40017 * 189.06890 * 18 16 15 34 34 H 1.08996 * 110.39941 * 311.48984 * 18 16 15 35 35 H 1.08998 * 110.40313 * 118.79488 * 19 18 16 36 36 H 1.09005 * 110.40047 * 241.20774 * 19 18 16 37 37 H 1.09002 * 112.02659 * 63.17328 * 22 16 15 38 38 H 1.09008 * 112.02561 * 189.69070 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0044 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0102 9 6 1.2509 -2.4992 -0.0058 10 6 2.2451 -3.6621 -0.0134 11 7 1.5106 -4.9343 -0.0140 12 6 2.4350 -6.0759 -0.0206 13 6 1.6349 -7.3800 -0.0217 14 1 0.9495 -7.4051 0.8254 15 6 0.8574 -7.5341 -1.3488 16 6 1.4218 -8.8400 -1.9871 17 1 0.7997 -9.3036 -2.7527 18 6 2.8723 -8.4671 -2.4211 19 6 3.6498 -8.3131 -1.0941 20 6 2.5959 -8.6074 0.0201 21 1 2.9945 -8.8672 1.0007 22 6 1.7134 -9.6894 -0.6999 23 1 -0.4850 -0.8400 0.0004 24 1 0.6280 -2.5591 0.8866 25 1 0.6206 -2.5548 -0.8933 26 1 2.8678 -3.6021 -0.9061 27 1 2.8758 -3.6067 0.8740 28 1 0.8709 -4.9821 -0.7929 29 1 3.0596 -6.0325 -0.9129 30 1 3.0665 -6.0374 0.8670 31 1 -0.2102 -7.6369 -1.1540 32 1 1.0434 -6.6798 -1.9997 33 1 3.3052 -9.2647 -3.0248 34 1 2.8738 -7.5276 -2.9737 35 1 4.4650 -9.0349 -1.0453 36 1 4.0337 -7.2977 -0.9942 37 1 0.8039 -9.9106 -0.1413 38 1 2.2787 -10.5936 -0.9262 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082527926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:27 Heat of formation + Delta-G solvation = -38.869890 kcal Electronic energy + Delta-G solvation = -15411.702459 eV Core-core repulsion = 13058.903779 eV Total energy + Delta-G solvation = -2352.798680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40596 -37.54193 -35.37731 -32.44415 -30.83675 -30.08199 -28.73563 -26.06655 -24.48734 -22.86322 -22.42474 -20.82595 -19.24967 -18.86037 -17.49476 -16.95357 -16.51213 -15.67666 -15.48715 -15.43932 -14.66055 -14.33225 -13.86008 -13.58190 -13.38328 -13.16629 -12.72771 -12.49301 -12.27273 -12.18353 -12.13294 -11.96484 -11.87411 -11.73718 -11.57582 -11.41492 -11.13957 -10.79064 -10.71021 -10.56888 -9.35107 -8.72451 -6.43015 1.51852 1.60923 1.80539 2.55439 3.13596 3.18421 3.54447 3.59273 3.69422 4.06065 4.18918 4.31497 4.37817 4.39008 4.40715 4.44968 4.53349 4.59458 4.63457 4.72625 4.83852 4.92123 4.96529 5.03141 5.14001 5.19920 5.21860 5.27258 5.29184 5.34993 5.38255 5.42404 5.55330 5.88241 6.11958 6.16187 6.39495 6.56026 7.40023 8.68715 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060864 B = 0.004623 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.931562 B = 6055.241827 C = 6169.802489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.016 3.984 10 C 0.090 3.910 11 N -0.699 5.699 12 C 0.065 3.935 13 C -0.084 4.084 14 H 0.068 0.932 15 C -0.119 4.119 16 C -0.102 4.102 17 H 0.108 0.892 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.096 4.096 21 H 0.106 0.894 22 C -0.114 4.114 23 H 0.255 0.745 24 H -0.009 1.009 25 H -0.013 1.013 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.336 0.664 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -20.143 -3.245 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.022 4.022 10 C -0.039 4.039 11 N -0.330 5.330 12 C -0.064 4.064 13 C -0.103 4.103 14 H 0.087 0.913 15 C -0.157 4.157 16 C -0.120 4.120 17 H 0.126 0.874 18 C -0.159 4.159 19 C -0.170 4.170 20 C -0.114 4.114 21 H 0.124 0.876 22 C -0.152 4.152 23 H 0.064 0.936 24 H 0.010 0.990 25 H 0.005 0.995 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.789 -18.515 -2.564 19.567 hybrid contribution 0.174 -1.314 -0.856 1.578 sum 5.963 -19.828 -3.420 20.986 Atomic orbital electron populations 1.70908 1.07982 1.29850 1.48504 1.27532 0.96589 1.06960 0.92472 0.82899 0.74094 0.70780 0.78093 1.20702 1.19306 1.19292 1.22435 0.94713 0.93349 1.55639 0.93052 1.19095 0.94988 0.93804 0.94267 1.21634 0.95326 0.88372 0.98554 1.60525 1.20408 1.01887 1.50175 1.22192 0.94234 0.89879 1.00051 1.22155 0.96999 0.93055 0.98048 0.91308 1.22687 0.99447 0.97639 0.95919 1.23609 0.95987 0.95025 0.97356 0.87384 1.22608 0.95445 1.00809 0.97011 1.22834 0.97909 1.01592 0.94619 1.23672 0.95247 0.94133 0.98385 0.87551 1.23528 0.99301 0.96989 0.95345 0.93597 0.99045 0.99468 0.96637 0.92525 0.84594 0.94693 0.91885 0.91810 0.93413 0.90743 0.93326 0.90850 0.92230 0.91072 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.65 21.45 0.29 -59.47 16 2 C -0.04 -2.28 5.46 84.66 0.46 -1.82 16 3 Si 1.12 51.15 29.90 68.60 2.05 53.21 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.62 -37.02 9.11 25.60 0.23 -36.79 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.02 0.88 4.54 29.85 0.14 1.01 16 10 C 0.09 4.03 5.62 86.30 0.49 4.52 16 11 N -0.70 -26.16 6.50 -513.87 -3.34 -29.50 16 12 C 0.06 1.92 4.23 86.30 0.37 2.29 16 13 C -0.08 -2.02 2.94 -9.24 -0.03 -2.05 16 14 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 15 C -0.12 -2.71 5.35 32.15 0.17 -2.54 16 16 C -0.10 -1.81 5.19 -7.38 -0.04 -1.85 16 17 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 18 C -0.12 -2.23 6.21 32.15 0.20 -2.03 16 19 C -0.13 -2.50 5.86 32.23 0.19 -2.31 16 20 C -0.10 -1.80 4.96 -7.24 -0.04 -1.84 16 21 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 22 C -0.11 -1.84 6.42 33.42 0.21 -1.62 16 23 H 0.25 16.57 7.22 -92.71 -0.67 15.90 16 24 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 25 H -0.01 -0.75 8.00 -2.38 -0.02 -0.77 16 26 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.34 12.32 7.44 -89.69 -0.67 11.66 16 29 H 0.04 1.03 5.93 -2.39 -0.01 1.02 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 1.22 6.67 -2.39 -0.02 1.21 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.02 7.84 -2.39 -0.02 1.01 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.31 5.34 -2.38 -0.01 1.29 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -65.98 291.04 1.81 -64.18 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.45 Total: 16.61 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 2.36 Total: -45.02 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -3.05 Total: -88.97 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.21 kcal Total: -65.98 1.81 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082527926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.307 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds