Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48495 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47189 * 300.00806 * 3 2 1 6 6 H 1.48505 * 109.46834 * 60.00542 * 3 2 1 7 7 C 1.37871 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99521 * 173.05706 * 7 2 1 9 9 C 1.50694 * 120.00452 * 353.06348 * 7 2 1 10 10 C 1.53002 * 115.55211 * 84.96275 * 9 7 2 11 11 N 1.46902 * 109.46978 * 65.16681 * 10 9 7 12 12 C 1.46903 * 110.99827 * 174.70030 * 11 10 9 13 13 C 1.52999 * 109.46812 * 180.02562 * 12 11 10 14 14 C 1.54965 * 110.92374 * 71.54671 * 13 12 11 15 15 C 1.54267 * 104.16006 * 156.29387 * 14 13 12 16 16 C 1.53871 * 106.64067 * 336.44431 * 15 14 13 17 17 C 1.54270 * 106.59758 * 359.97246 * 16 15 14 18 18 C 1.53001 * 117.50007 * 230.63355 * 9 7 2 19 19 C 1.53001 * 117.49915 * 299.29541 * 9 7 2 20 20 H 0.96996 * 120.00118 * 5.03107 * 1 2 3 21 21 H 1.09002 * 109.47222 * 305.17279 * 10 9 7 22 22 H 1.08999 * 109.47291 * 185.16847 * 10 9 7 23 23 H 1.00892 * 111.00610 * 298.66010 * 11 10 9 24 24 H 1.08996 * 109.46860 * 60.00524 * 12 11 10 25 25 H 1.08994 * 109.47319 * 300.00330 * 12 11 10 26 26 H 1.09000 * 110.67355 * 308.23406 * 13 12 11 27 27 H 1.09004 * 110.47926 * 37.63556 * 14 13 12 28 28 H 1.09002 * 110.52732 * 274.97016 * 14 13 12 29 29 H 1.09003 * 110.02716 * 217.13311 * 15 14 13 30 30 H 1.09005 * 110.03243 * 95.75270 * 15 14 13 31 31 H 1.08999 * 110.03689 * 119.26172 * 16 15 14 32 32 H 1.09003 * 110.02760 * 240.64529 * 16 15 14 33 33 H 1.09006 * 110.48429 * 142.29118 * 17 16 15 34 34 H 1.08999 * 110.49023 * 264.79590 * 17 16 15 35 35 H 1.08997 * 117.50156 * 214.99862 * 18 9 7 36 36 H 1.08997 * 117.49920 * 0.02562 * 18 9 7 37 37 H 1.08999 * 117.49545 * 359.97252 * 19 9 7 38 38 H 1.09001 * 117.50389 * 144.97302 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0786 -1.1973 -0.1136 9 6 1.2594 -2.4944 0.1565 10 6 0.6847 -3.0855 -1.1324 11 7 1.7840 -3.4606 -2.0318 12 6 1.2755 -4.1469 -3.2270 13 6 2.4469 -4.5215 -4.1370 14 6 3.2775 -5.6767 -3.5228 15 6 3.9738 -6.3273 -4.7359 16 6 3.1218 -5.9828 -5.9701 17 6 1.9363 -5.1350 -5.4644 18 6 1.7626 -3.4731 1.2195 19 6 0.4609 -2.6999 1.4453 20 1 -0.4850 0.8368 -0.0737 21 1 0.0520 -2.3447 -1.6214 22 1 0.0924 -3.9690 -0.8945 23 1 2.3353 -2.6544 -2.2849 24 1 0.5950 -3.4858 -3.7636 25 1 0.7442 -5.0506 -2.9286 26 1 3.0773 -3.6535 -4.3300 27 1 2.6239 -6.3949 -3.0276 28 1 4.0164 -5.2861 -2.8231 29 1 4.0203 -7.4084 -4.6042 30 1 4.9790 -5.9219 -4.8512 31 1 3.7132 -5.4095 -6.6840 32 1 2.7555 -6.8968 -6.4378 33 1 1.6965 -4.3490 -6.1806 34 1 1.0652 -5.7654 -5.2856 35 1 1.6842 -4.5380 1.0006 36 1 2.6324 -3.1762 1.8055 37 1 0.4749 -1.8946 2.1798 38 1 -0.4740 -3.2558 1.3750 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -17.473753 kcal Electronic energy + Delta-G solvation = -15462.141169 eV Core-core repulsion = 13110.270295 eV Total energy + Delta-G solvation = -2351.870874 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41964 -38.47224 -35.49803 -33.95788 -30.68887 -29.44874 -27.69111 -26.32078 -23.75360 -22.78515 -21.27434 -20.96671 -20.58637 -17.90617 -16.76558 -16.60040 -16.50417 -15.82249 -15.36543 -15.19168 -14.67017 -14.30703 -14.03746 -13.47423 -13.13590 -12.94807 -12.86999 -12.70386 -12.29404 -12.06479 -12.01313 -11.85096 -11.78228 -11.57842 -11.38526 -11.21267 -11.17716 -10.70983 -10.39686 -9.92094 -9.06056 -8.08381 -6.19433 1.39099 1.43118 1.53412 2.43076 3.19563 3.29838 3.69778 3.80881 3.87640 4.03536 4.30980 4.43337 4.56639 4.63907 4.68226 4.70816 4.74087 4.81266 4.89166 4.91421 4.99174 5.02066 5.05814 5.09595 5.15289 5.21635 5.28510 5.30860 5.45319 5.58643 5.60733 5.67013 5.70039 5.81099 6.39850 6.49608 6.68348 6.90284 7.48663 8.99411 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.006434 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.626098 B = 4350.981263 C = 4733.636578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.121 3.879 11 N -0.676 5.676 12 C 0.068 3.932 13 C -0.087 4.087 14 C -0.105 4.105 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.177 4.177 19 C -0.169 4.169 20 H 0.258 0.742 21 H 0.001 0.999 22 H 0.044 0.956 23 H 0.338 0.662 24 H 0.012 0.988 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -10.128 -9.748 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.009 4.009 11 N -0.307 5.307 12 C -0.061 4.061 13 C -0.106 4.106 14 C -0.143 4.143 15 C -0.162 4.162 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.214 4.214 19 C -0.207 4.207 20 H 0.067 0.933 21 H 0.019 0.981 22 H 0.062 0.938 23 H 0.155 0.845 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.400 -10.599 -9.352 14.804 hybrid contribution -0.382 1.975 -0.152 2.018 sum 4.018 -8.624 -9.505 13.448 Atomic orbital electron populations 1.70112 1.07120 1.27085 1.50536 1.25670 0.95479 1.01809 0.94600 0.85669 0.79328 0.80244 0.77380 1.19115 1.20783 1.21057 1.20717 0.92933 0.90149 1.50065 0.92917 1.18916 0.98131 0.93653 0.86860 1.21144 0.91294 0.94958 0.93460 1.60430 1.22857 1.31457 1.15916 1.21983 0.96160 0.97719 0.90234 1.22089 0.95750 0.98203 0.94515 1.22236 0.98468 0.96444 0.97164 1.22165 0.98988 1.00667 0.94369 1.22103 0.96238 0.99881 0.97488 1.22377 0.98487 0.99090 0.95586 1.22832 0.96523 0.96477 1.05594 1.22459 0.93736 1.01372 1.03168 0.93278 0.98077 0.93790 0.84450 0.96957 0.91601 0.91623 0.92300 0.92681 0.91221 0.91864 0.91504 0.90857 0.91626 0.91395 0.89677 0.90956 0.92566 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.29 12.95 21.45 0.28 -52.01 16 2 C 0.02 1.33 5.39 84.65 0.46 1.78 16 3 Si 0.95 43.43 29.55 68.60 2.03 45.45 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.50 -27.18 8.32 25.60 0.21 -26.96 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 9 C 0.03 1.25 1.56 -52.93 -0.08 1.16 16 10 C 0.12 5.52 5.54 86.30 0.48 6.00 16 11 N -0.68 -26.67 6.39 -513.88 -3.29 -29.96 16 12 C 0.07 2.21 5.12 86.30 0.44 2.65 16 13 C -0.09 -2.30 3.05 -9.48 -0.03 -2.33 16 14 C -0.11 -2.65 6.22 31.70 0.20 -2.45 16 15 C -0.12 -2.46 6.80 31.32 0.21 -2.24 16 16 C -0.12 -2.17 6.80 31.32 0.21 -1.95 16 17 C -0.12 -2.50 6.27 31.67 0.20 -2.31 16 18 C -0.18 -7.88 9.96 30.62 0.30 -7.57 16 19 C -0.17 -8.19 9.46 30.62 0.29 -7.90 16 20 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 21 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 22 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 23 H 0.34 14.15 8.30 -89.70 -0.74 13.41 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.52 7.95 -2.38 -0.02 1.50 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.40 8.05 -2.39 -0.02 1.39 16 35 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -57.38 307.06 2.17 -55.21 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.25 Total: 23.43 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.89 Total: -42.12 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.01 Total: -81.97 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -57.38 2.17 -55.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.740 kcal (2) G-P(sol) polarization free energy of solvation -57.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds