Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47525 * 65.00259 * 13 12 11 15 15 C 1.53004 * 117.49777 * 248.74798 * 14 13 12 16 16 C 1.52999 * 117.49935 * 180.09117 * 14 13 12 17 17 C 1.53001 * 109.47271 * 185.00310 * 13 12 11 18 18 C 1.52996 * 117.50296 * 128.74427 * 17 13 12 19 19 C 1.53002 * 117.50132 * 60.08189 * 17 13 12 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 26 26 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 27 27 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 28 28 H 1.09003 * 109.47454 * 304.99901 * 13 12 11 29 29 H 1.08994 * 115.55125 * 34.41246 * 14 13 12 30 30 H 1.09000 * 117.49762 * 359.97438 * 15 14 13 31 31 H 1.09001 * 117.50057 * 145.01444 * 15 14 13 32 32 H 1.09004 * 117.49125 * 214.97745 * 16 14 13 33 33 H 1.08995 * 117.50308 * 359.96580 * 16 14 13 34 34 H 1.08998 * 115.54599 * 274.41578 * 17 13 12 35 35 H 1.09004 * 117.49909 * 0.02562 * 18 17 13 36 36 H 1.09001 * 117.50065 * 145.01941 * 18 17 13 37 37 H 1.08994 * 117.50059 * 214.98289 * 19 17 13 38 38 H 1.09006 * 117.49696 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 6 1.6353 -7.3800 0.0022 14 6 0.8494 -7.4962 -1.3053 15 6 -0.6743 -7.3818 -1.2262 16 6 -0.0214 -8.7393 -1.4981 17 6 2.5934 -8.5662 0.1285 18 6 2.2978 -9.6006 1.2163 19 6 3.4734 -8.6337 1.3783 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8741 -4.9845 -0.7791 26 1 3.0633 -6.0352 -0.8876 27 1 3.0634 -6.0345 0.8923 28 1 0.9426 -7.3814 0.8439 29 1 1.3399 -7.0836 -2.1869 30 1 -1.1168 -7.2243 -0.2426 31 1 -1.1862 -6.8944 -2.0560 32 1 -0.1039 -9.1444 -2.5067 33 1 -0.0339 -9.4747 -0.6937 34 1 3.0197 -8.9277 -0.8073 35 1 1.4203 -9.4363 1.8418 36 1 2.5299 -10.6426 0.9963 37 1 4.4784 -9.0401 1.2649 38 1 3.3700 -7.8328 2.1105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083895098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = 26.344594 kcal Electronic energy + Delta-G solvation = -15034.301129 eV Core-core repulsion = 12684.330361 eV Total energy + Delta-G solvation = -2349.970768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01128 -36.16523 -35.51419 -32.94012 -30.60106 -27.99107 -24.39433 -22.89649 -22.36856 -21.95916 -21.31655 -20.44863 -19.51673 -16.29591 -15.91743 -15.73083 -14.79423 -14.60735 -14.41269 -13.91329 -13.33420 -13.03486 -12.46908 -12.10502 -11.80300 -11.60002 -11.53810 -11.35560 -11.22714 -10.89026 -10.88044 -10.54900 -10.35094 -10.23506 -9.92449 -9.85204 -9.73940 -9.26694 -9.10736 -8.31833 -7.71697 -5.96530 -3.99022 3.35434 3.39551 3.42094 3.74788 3.86660 4.44814 4.52056 4.74042 4.84904 4.97212 5.05358 5.11190 5.18906 5.38254 5.39364 5.46499 5.57931 5.70186 5.74037 5.84470 5.88913 5.94116 6.03225 6.06608 6.11867 6.22240 6.32652 6.40559 6.45870 6.55468 7.03703 7.56089 7.78559 7.88485 8.04795 8.14431 8.47895 9.08160 9.64460 11.14898 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.004867 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.543089 B = 5751.258478 C = 6261.739465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.068 3.932 13 C -0.025 4.025 14 C -0.144 4.144 15 C -0.172 4.172 16 C -0.181 4.181 17 C -0.138 4.138 18 C -0.181 4.181 19 C -0.182 4.182 20 H 0.261 0.739 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.056 0.944 25 H 0.337 0.663 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -18.279 -1.052 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.061 4.061 13 C -0.044 4.044 14 C -0.162 4.162 15 C -0.209 4.209 16 C -0.218 4.218 17 C -0.157 4.157 18 C -0.218 4.218 19 C -0.219 4.219 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.619 -18.153 -0.363 18.345 hybrid contribution 0.828 0.970 -0.985 1.611 sum 3.447 -17.183 -1.348 17.577 Atomic orbital electron populations 1.69962 1.06026 1.26651 1.50659 1.24997 0.94831 0.99162 0.95328 0.86656 0.79571 0.83160 0.78579 1.20316 1.21270 1.20229 1.21157 0.92939 0.91085 1.50884 0.92853 1.19058 0.94024 0.90438 0.97646 1.22144 0.96949 0.88707 0.98461 1.60577 1.19753 1.01953 1.49905 1.21905 0.94297 0.89905 1.00034 1.20382 0.95369 0.92488 0.96135 1.22249 0.92787 1.02235 0.98955 1.23008 0.94952 0.99665 1.03300 1.22893 1.05290 0.91433 1.02167 1.22224 1.01452 0.98412 0.93567 1.22994 1.00198 0.95637 1.02952 1.22966 0.95362 1.02563 1.00996 0.92966 0.96886 0.95690 0.96877 0.92509 0.84538 0.96031 0.91375 0.90258 0.88346 0.88521 0.88950 0.89440 0.88971 0.88077 0.88944 0.89261 0.89125 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.69 -12.72 6.50 -113.78 -0.74 -13.46 16 12 C 0.07 1.03 5.04 -3.82 -0.02 1.01 16 13 C -0.03 -0.31 2.37 -90.62 -0.21 -0.53 16 14 C -0.14 -1.71 4.17 -90.62 -0.38 -2.09 16 15 C -0.17 -2.01 10.16 -26.69 -0.27 -2.29 16 16 C -0.18 -1.87 9.88 -26.70 -0.26 -2.13 16 17 C -0.14 -1.47 4.81 -90.62 -0.44 -1.91 16 18 C -0.18 -1.72 10.18 -26.70 -0.27 -2.00 16 19 C -0.18 -1.85 9.68 -26.69 -0.26 -2.11 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.34 6.08 7.79 -39.29 -0.31 5.77 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 28 H 0.08 1.08 7.66 -51.93 -0.40 0.68 16 29 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.05 7.59 -51.93 -0.39 0.66 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -29.75 312.33 -9.92 -39.68 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.92 Total: 2.62 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.69 Total: -23.90 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.00 Total: -40.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.75 -9.92 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.022 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds