Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47525 * 65.00259 * 13 12 11 15 15 C 1.53004 * 117.49777 * 248.74798 * 14 13 12 16 16 C 1.52999 * 117.49935 * 180.09117 * 14 13 12 17 17 C 1.53001 * 109.47271 * 185.00310 * 13 12 11 18 18 C 1.52996 * 117.50296 * 128.74427 * 17 13 12 19 19 C 1.53002 * 117.50132 * 60.08189 * 17 13 12 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 26 26 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 27 27 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 28 28 H 1.09003 * 109.47454 * 304.99901 * 13 12 11 29 29 H 1.08994 * 115.55125 * 34.41246 * 14 13 12 30 30 H 1.09000 * 117.49762 * 359.97438 * 15 14 13 31 31 H 1.09001 * 117.50057 * 145.01444 * 15 14 13 32 32 H 1.09004 * 117.49125 * 214.97745 * 16 14 13 33 33 H 1.08995 * 117.50308 * 359.96580 * 16 14 13 34 34 H 1.08998 * 115.54599 * 274.41578 * 17 13 12 35 35 H 1.09004 * 117.49909 * 0.02562 * 18 17 13 36 36 H 1.09001 * 117.50065 * 145.01941 * 18 17 13 37 37 H 1.08994 * 117.50059 * 214.98289 * 19 17 13 38 38 H 1.09006 * 117.49696 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 6 1.6353 -7.3800 0.0022 14 6 0.8494 -7.4962 -1.3053 15 6 -0.6743 -7.3818 -1.2262 16 6 -0.0214 -8.7393 -1.4981 17 6 2.5934 -8.5662 0.1285 18 6 2.2978 -9.6006 1.2163 19 6 3.4734 -8.6337 1.3783 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8741 -4.9845 -0.7791 26 1 3.0633 -6.0352 -0.8876 27 1 3.0634 -6.0345 0.8923 28 1 0.9426 -7.3814 0.8439 29 1 1.3399 -7.0836 -2.1869 30 1 -1.1168 -7.2243 -0.2426 31 1 -1.1862 -6.8944 -2.0560 32 1 -0.1039 -9.1444 -2.5067 33 1 -0.0339 -9.4747 -0.6937 34 1 3.0197 -8.9277 -0.8073 35 1 1.4203 -9.4363 1.8418 36 1 2.5299 -10.6426 0.9963 37 1 4.4784 -9.0401 1.2649 38 1 3.3700 -7.8328 2.1105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083895098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = 9.717913 kcal Electronic energy + Delta-G solvation = -15035.022116 eV Core-core repulsion = 12684.330361 eV Total energy + Delta-G solvation = -2350.691755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98623 -37.17196 -36.94417 -34.99187 -32.24556 -29.59980 -26.23821 -24.12646 -23.28201 -22.91582 -22.47176 -22.07709 -20.50456 -18.50256 -17.08605 -16.79140 -16.46213 -15.92652 -15.74246 -15.02348 -14.75996 -14.59402 -14.04874 -13.75033 -13.17797 -13.02391 -12.76565 -12.53212 -12.41346 -12.35274 -12.25925 -12.11073 -11.83428 -11.45940 -11.33040 -11.19671 -11.08181 -10.64336 -10.61133 -10.56025 -9.25276 -8.20104 -6.32075 1.40223 1.43808 1.51785 2.40724 2.91070 2.95722 3.13030 3.40168 3.68580 3.97702 4.02234 4.15439 4.21026 4.26292 4.33518 4.45451 4.53943 4.60734 4.72703 4.82023 4.82724 4.86579 4.91260 5.05406 5.09462 5.11105 5.13640 5.32127 5.33719 5.35968 5.43944 5.54222 5.67166 5.78674 6.15159 6.30130 6.57750 6.84847 7.37204 8.91926 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.004867 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.543089 B = 5751.258478 C = 6261.739465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.083 3.917 11 N -0.695 5.695 12 C 0.070 3.930 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.186 4.186 16 C -0.158 4.158 17 C -0.143 4.143 18 C -0.169 4.169 19 C -0.186 4.186 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.006 1.006 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.338 0.662 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -19.142 -1.327 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.046 4.046 11 N -0.326 5.326 12 C -0.059 4.059 13 C -0.034 4.034 14 C -0.172 4.172 15 C -0.223 4.223 16 C -0.195 4.195 17 C -0.162 4.162 18 C -0.206 4.206 19 C -0.223 4.223 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.012 0.988 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.869 -19.040 -0.638 19.440 hybrid contribution 0.400 1.200 -0.887 1.544 sum 4.270 -17.841 -1.525 18.408 Atomic orbital electron populations 1.70102 1.07856 1.27897 1.51293 1.25983 0.95770 1.03386 0.94522 0.85465 0.78247 0.77893 0.79207 1.19115 1.20696 1.19140 1.21590 0.93519 0.92280 1.51167 0.92187 1.18908 0.94274 0.92329 0.94954 1.21778 0.95602 0.88696 0.98514 1.60498 1.20287 1.01684 1.50168 1.21974 0.94090 0.89752 1.00076 1.20224 0.95231 0.91878 0.96021 1.22218 0.92654 1.03898 0.98457 1.23021 0.94951 1.01426 1.02907 1.22938 1.02714 0.90612 1.03215 1.22150 1.01552 0.98191 0.94292 1.23052 0.99677 0.96232 1.01667 1.23012 0.96327 1.02668 1.00298 0.92706 0.99162 0.98803 0.96590 0.92538 0.84372 0.95633 0.91499 0.91547 0.88709 0.89447 0.88963 0.88014 0.88179 0.87280 0.89208 0.87474 0.87814 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C 0.08 3.66 5.62 86.30 0.49 4.15 16 11 N -0.70 -25.85 6.50 -513.88 -3.34 -29.19 16 12 C 0.07 2.07 5.04 86.30 0.43 2.50 16 13 C -0.01 -0.36 2.37 -10.80 -0.03 -0.38 16 14 C -0.15 -3.50 4.17 -10.79 -0.05 -3.55 16 15 C -0.19 -4.27 10.16 30.62 0.31 -3.96 16 16 C -0.16 -2.96 9.88 30.62 0.30 -2.65 16 17 C -0.14 -2.78 4.81 -10.79 -0.05 -2.83 16 18 C -0.17 -2.84 10.18 30.62 0.31 -2.53 16 19 C -0.19 -3.45 9.68 30.62 0.30 -3.16 16 20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.34 12.44 7.79 -89.70 -0.70 11.74 16 26 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.99 7.13 -2.39 -0.02 1.97 16 28 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 29 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 30 H 0.09 2.15 8.05 -2.39 -0.02 2.13 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.09 1.57 8.05 -2.38 -0.02 1.55 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.78 7.59 -2.38 -0.02 1.76 16 Total: -1.00 -63.59 312.33 2.15 -61.45 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.30 Total: 20.10 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 2.87 Total: -41.67 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.06 Total: -86.71 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.59 2.15 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.165 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds