Wall clock time and date at job start Mon Mar 30 2020 03:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48508 * 109.46943 * 274.67492 * 3 2 1 5 5 H 1.48498 * 109.47283 * 34.67114 * 3 2 1 6 6 H 1.48500 * 109.47389 * 154.67886 * 3 2 1 7 7 C 1.37880 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99768 * 186.05527 * 7 2 1 9 9 C 1.50695 * 119.99846 * 6.06403 * 7 2 1 10 10 H 1.08995 * 110.76600 * 308.38763 * 9 7 2 11 11 C 1.55148 * 110.70601 * 71.58559 * 9 7 2 12 12 C 1.54914 * 101.64979 * 154.03634 * 11 9 7 13 13 N 1.47850 * 104.79583 * 322.93239 * 12 11 9 14 14 C 1.46894 * 110.99768 * 146.36742 * 13 12 11 15 15 C 1.52997 * 109.47092 * 179.15786 * 14 13 12 16 16 C 1.53002 * 109.47491 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47140 * 59.99477 * 16 15 14 18 18 C 1.53005 * 109.47196 * 300.00181 * 17 16 15 19 19 C 1.52997 * 109.47673 * 59.15217 * 14 13 12 20 20 C 1.47435 * 108.56837 * 24.09545 * 13 12 11 21 21 H 0.96993 * 120.00176 * 0.02562 * 1 2 3 22 22 H 1.08995 * 110.98748 * 35.94847 * 11 9 7 23 23 H 1.09000 * 110.99206 * 272.12614 * 11 9 7 24 24 H 1.09000 * 110.37447 * 204.10196 * 12 11 9 25 25 H 1.09003 * 110.46539 * 81.80889 * 12 11 9 26 26 H 1.09005 * 109.47207 * 299.15243 * 14 13 12 27 27 H 1.09010 * 109.47056 * 299.99622 * 15 14 13 28 28 H 1.08999 * 109.47733 * 59.99656 * 15 14 13 29 29 H 1.08997 * 109.46686 * 299.99626 * 16 15 14 30 30 H 1.08998 * 109.47431 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47313 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47210 * 60.00470 * 17 16 15 33 33 H 1.08997 * 109.47278 * 300.00248 * 18 17 16 34 34 H 1.09000 * 109.47051 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47478 * 300.00445 * 19 14 13 36 36 H 1.09005 * 109.46782 * 59.99767 * 19 14 13 37 37 H 1.08996 * 109.88913 * 118.41334 * 20 13 12 38 38 H 1.09001 * 109.88783 * 239.60470 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3978 2.1035 -1.3955 5 1 1.4995 2.6222 0.7964 6 1 3.5927 1.4138 0.5988 7 6 2.0046 -1.1940 0.0005 8 1 3.0801 -1.1965 0.0992 9 6 1.2575 -2.4955 -0.1368 10 1 0.4463 -2.5538 0.5889 11 6 0.7156 -2.6673 -1.5803 12 6 0.6269 -4.2093 -1.6997 13 7 1.8058 -4.7134 -0.9636 14 6 1.5075 -5.9915 -0.3038 15 6 2.7546 -6.4908 0.4284 16 6 2.4441 -7.8223 1.1151 17 6 2.0230 -8.8519 0.0647 18 6 0.7757 -8.3526 -0.6675 19 6 1.0859 -7.0214 -1.3538 20 6 2.2165 -3.6944 0.0195 21 1 -0.4850 0.8400 -0.0004 22 1 1.4139 -2.2587 -2.3107 23 1 -0.2685 -2.2104 -1.6850 24 1 0.6745 -4.5123 -2.7457 25 1 -0.2918 -4.5749 -1.2409 26 1 0.6979 -5.8505 0.4123 27 1 3.5643 -6.6319 -0.2877 28 1 3.0550 -5.7571 1.1765 29 1 1.6344 -7.6816 1.8311 30 1 3.3325 -8.1778 1.6372 31 1 1.8014 -9.8004 0.5540 32 1 2.8327 -8.9926 -0.6513 33 1 -0.0340 -8.2119 0.0485 34 1 0.4760 -9.0859 -1.4161 35 1 0.1974 -6.6658 -1.8754 36 1 1.8956 -7.1625 -2.0699 37 1 2.1410 -4.1006 1.0282 38 1 3.2406 -3.3785 -0.1796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084453588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:00 Heat of formation + Delta-G solvation = -25.537381 kcal Electronic energy + Delta-G solvation = -15929.899906 eV Core-core repulsion = 13577.679367 eV Total energy + Delta-G solvation = -2352.220539 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16979 -36.68329 -33.00970 -30.96188 -30.78232 -28.18872 -27.48271 -24.37803 -22.34672 -21.91422 -19.97047 -19.54812 -19.05121 -16.47784 -15.94067 -14.67665 -14.43482 -14.32158 -14.00969 -13.76105 -13.03378 -12.79926 -12.42165 -12.08160 -11.92072 -11.67122 -11.30879 -11.05064 -10.97993 -10.89436 -10.73829 -10.55403 -10.43907 -10.31776 -9.89100 -9.71824 -9.60541 -9.22642 -8.86515 -8.36289 -7.51029 -6.01212 -4.02268 3.31986 3.38973 3.42369 4.44681 4.55260 4.87682 4.88172 5.14871 5.31351 5.36869 5.48522 5.63020 5.64744 5.66814 5.76497 5.84610 5.95409 6.09206 6.12492 6.20312 6.23088 6.28946 6.31739 6.35223 6.46487 6.49590 6.63750 6.68655 6.93695 7.17200 7.20389 7.57403 7.65640 7.91276 7.94509 8.02501 8.45346 9.00385 9.61046 11.09427 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056616 B = 0.006163 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.438769 B = 4542.104749 C = 4810.450758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.033 3.967 10 H 0.035 0.965 11 C -0.110 4.110 12 C 0.041 3.959 13 N -0.530 5.530 14 C 0.083 3.917 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.111 4.111 20 C 0.048 3.952 21 H 0.260 0.740 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -14.264 -0.667 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.013 3.987 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.087 4.087 13 N -0.254 5.254 14 C -0.026 4.026 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.079 4.079 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.150 -14.235 -1.005 14.431 hybrid contribution -0.316 1.117 0.556 1.287 sum 1.833 -13.118 -0.449 13.253 Atomic orbital electron populations 1.69970 1.05984 1.26492 1.50555 1.24987 0.94794 0.99107 0.94992 0.86616 0.79984 0.83634 0.77991 1.20703 1.21347 1.19843 1.21090 0.93243 0.90368 1.50005 0.92463 1.19838 0.93919 0.92168 0.92731 0.94698 1.22695 1.00955 0.90797 1.00447 1.23054 0.90789 0.97623 0.97202 1.63649 1.33146 1.02541 1.26103 1.21713 0.95935 0.90584 0.94409 1.21617 0.97947 0.96065 0.99386 1.21527 1.00865 0.95449 0.97752 1.21530 0.97991 0.97882 0.98128 1.21519 0.97727 0.97016 0.99329 1.21568 1.01327 0.93992 0.97967 1.22993 1.00729 0.92190 0.92018 0.93082 0.92453 0.91897 0.92228 0.95073 0.94869 0.91458 0.91724 0.92302 0.92204 0.92549 0.92050 0.92311 0.92267 0.92167 0.91469 0.94699 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.14 55.43 0.73 -25.28 16 2 C 0.06 1.76 5.37 -17.82 -0.10 1.67 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.13 8.43 -34.44 -0.29 -14.42 16 8 H 0.06 1.57 7.51 -52.49 -0.39 1.18 16 9 C 0.03 0.83 2.68 -89.95 -0.24 0.59 16 10 H 0.03 0.98 8.08 -51.93 -0.42 0.56 16 11 C -0.11 -2.60 6.31 -24.58 -0.16 -2.75 16 12 C 0.04 0.81 5.40 -2.29 -0.01 0.79 16 13 N -0.53 -10.26 5.03 -223.30 -1.12 -11.38 16 14 C 0.08 1.34 1.53 -67.72 -0.10 1.24 16 15 C -0.11 -1.62 5.07 -26.73 -0.14 -1.76 16 16 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.12 -1.35 5.92 -26.76 -0.16 -1.50 16 19 C -0.11 -1.53 5.08 -26.76 -0.14 -1.67 16 20 C 0.05 1.04 5.73 -2.84 -0.02 1.02 16 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 23 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 26 H 0.03 0.59 8.10 -51.93 -0.42 0.16 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.06 1.00 6.50 -51.93 -0.34 0.66 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.85 7.03 -51.93 -0.37 0.49 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.73 6.35 -51.93 -0.33 0.40 16 38 H 0.07 1.49 7.61 -51.93 -0.40 1.10 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -28.26 288.93 -9.56 -37.82 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.84 Total: -2.22 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.66 Total: -19.76 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.39 Total: -36.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.26 -9.56 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds