Wall clock time and date at job start Mon Mar 30 2020 03:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48508 * 109.46943 * 274.67492 * 3 2 1 5 5 H 1.48498 * 109.47283 * 34.67114 * 3 2 1 6 6 H 1.48500 * 109.47389 * 154.67886 * 3 2 1 7 7 C 1.37880 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99768 * 186.05527 * 7 2 1 9 9 C 1.50695 * 119.99846 * 6.06403 * 7 2 1 10 10 H 1.08995 * 110.76600 * 308.38763 * 9 7 2 11 11 C 1.55148 * 110.70601 * 71.58559 * 9 7 2 12 12 C 1.54914 * 101.64979 * 154.03634 * 11 9 7 13 13 N 1.47850 * 104.79583 * 322.93239 * 12 11 9 14 14 C 1.46894 * 110.99768 * 146.36742 * 13 12 11 15 15 C 1.52997 * 109.47092 * 179.15786 * 14 13 12 16 16 C 1.53002 * 109.47491 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47140 * 59.99477 * 16 15 14 18 18 C 1.53005 * 109.47196 * 300.00181 * 17 16 15 19 19 C 1.52997 * 109.47673 * 59.15217 * 14 13 12 20 20 C 1.47435 * 108.56837 * 24.09545 * 13 12 11 21 21 H 0.96993 * 120.00176 * 0.02562 * 1 2 3 22 22 H 1.08995 * 110.98748 * 35.94847 * 11 9 7 23 23 H 1.09000 * 110.99206 * 272.12614 * 11 9 7 24 24 H 1.09000 * 110.37447 * 204.10196 * 12 11 9 25 25 H 1.09003 * 110.46539 * 81.80889 * 12 11 9 26 26 H 1.09005 * 109.47207 * 299.15243 * 14 13 12 27 27 H 1.09010 * 109.47056 * 299.99622 * 15 14 13 28 28 H 1.08999 * 109.47733 * 59.99656 * 15 14 13 29 29 H 1.08997 * 109.46686 * 299.99626 * 16 15 14 30 30 H 1.08998 * 109.47431 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47313 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47210 * 60.00470 * 17 16 15 33 33 H 1.08997 * 109.47278 * 300.00248 * 18 17 16 34 34 H 1.09000 * 109.47051 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47478 * 300.00445 * 19 14 13 36 36 H 1.09005 * 109.46782 * 59.99767 * 19 14 13 37 37 H 1.08996 * 109.88913 * 118.41334 * 20 13 12 38 38 H 1.09001 * 109.88783 * 239.60470 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3978 2.1035 -1.3955 5 1 1.4995 2.6222 0.7964 6 1 3.5927 1.4138 0.5988 7 6 2.0046 -1.1940 0.0005 8 1 3.0801 -1.1965 0.0992 9 6 1.2575 -2.4955 -0.1368 10 1 0.4463 -2.5538 0.5889 11 6 0.7156 -2.6673 -1.5803 12 6 0.6269 -4.2093 -1.6997 13 7 1.8058 -4.7134 -0.9636 14 6 1.5075 -5.9915 -0.3038 15 6 2.7546 -6.4908 0.4284 16 6 2.4441 -7.8223 1.1151 17 6 2.0230 -8.8519 0.0647 18 6 0.7757 -8.3526 -0.6675 19 6 1.0859 -7.0214 -1.3538 20 6 2.2165 -3.6944 0.0195 21 1 -0.4850 0.8400 -0.0004 22 1 1.4139 -2.2587 -2.3107 23 1 -0.2685 -2.2104 -1.6850 24 1 0.6745 -4.5123 -2.7457 25 1 -0.2918 -4.5749 -1.2409 26 1 0.6979 -5.8505 0.4123 27 1 3.5643 -6.6319 -0.2877 28 1 3.0550 -5.7571 1.1765 29 1 1.6344 -7.6816 1.8311 30 1 3.3325 -8.1778 1.6372 31 1 1.8014 -9.8004 0.5540 32 1 2.8327 -8.9926 -0.6513 33 1 -0.0340 -8.2119 0.0485 34 1 0.4760 -9.0859 -1.4161 35 1 0.1974 -6.6658 -1.8754 36 1 1.8956 -7.1625 -2.0699 37 1 2.1410 -4.1006 1.0282 38 1 3.2406 -3.3785 -0.1796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084453588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:59 Heat of formation + Delta-G solvation = -41.673607 kcal Electronic energy + Delta-G solvation = -15930.599626 eV Core-core repulsion = 13577.679367 eV Total energy + Delta-G solvation = -2352.920258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57413 -38.09378 -34.95619 -32.58114 -31.88001 -29.94858 -28.96637 -26.34389 -23.51065 -23.25121 -21.44728 -21.12017 -20.49263 -18.59401 -17.32853 -16.52115 -16.02793 -15.70392 -15.07778 -14.92943 -14.51238 -14.35316 -14.07921 -13.51281 -13.49624 -13.04361 -13.01853 -12.66845 -12.56872 -12.43955 -12.16908 -12.04392 -11.96204 -11.56936 -11.40576 -11.16686 -11.09367 -10.92469 -10.82123 -10.51253 -9.13510 -8.16960 -6.25403 1.40253 1.41317 1.52086 2.41784 3.10957 3.14689 3.81215 3.87539 4.06602 4.21229 4.25747 4.32020 4.45146 4.48581 4.54478 4.56553 4.64987 4.66869 4.78354 4.84615 4.97681 5.00312 5.16913 5.18401 5.23833 5.28665 5.30224 5.34779 5.40039 5.41813 5.55168 5.59446 5.68457 5.84217 6.17227 6.32116 6.40266 6.83933 7.41661 8.93674 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056616 B = 0.006163 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.438769 B = 4542.104749 C = 4810.450758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.024 3.976 10 H -0.001 1.001 11 C -0.105 4.105 12 C 0.053 3.947 13 N -0.530 5.530 14 C 0.078 3.922 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.106 4.106 20 C 0.062 3.938 21 H 0.261 0.739 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -15.775 -1.030 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.005 3.995 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.074 4.074 13 N -0.254 5.254 14 C -0.030 4.030 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.065 4.065 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.002 -15.764 -1.369 16.106 hybrid contribution -0.600 1.575 0.690 1.821 sum 2.402 -14.190 -0.678 14.408 Atomic orbital electron populations 1.70093 1.07462 1.27402 1.51354 1.25791 0.95615 1.02624 0.94559 0.85564 0.78861 0.79195 0.78190 1.20064 1.20906 1.19015 1.21427 0.93379 0.91725 1.50083 0.92637 1.19807 0.93620 0.93198 0.92901 0.98253 1.22508 0.99195 0.93728 0.98912 1.22949 0.91213 0.94533 0.98713 1.63699 1.32980 1.03075 1.25651 1.21884 0.96478 0.89628 0.95003 1.21594 0.96937 0.97264 0.98951 1.21517 1.01557 0.94189 0.97975 1.21531 0.97655 0.98198 0.97842 1.21516 0.98137 0.95907 0.99702 1.21540 1.01069 0.94499 0.97282 1.22722 0.99281 0.91534 0.93011 0.92979 0.93483 0.94057 0.89881 0.94725 0.96403 0.91396 0.93303 0.92592 0.90630 0.90495 0.91527 0.92535 0.90313 0.92595 0.91293 0.94283 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.13 13.14 21.45 0.28 -54.85 16 2 C 0.01 0.72 5.37 84.66 0.45 1.18 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.95 8.43 25.60 0.22 -29.73 16 8 H 0.06 3.09 7.51 -2.91 -0.02 3.07 16 9 C 0.02 1.27 2.68 -10.36 -0.03 1.24 16 10 H 0.00 -0.04 8.08 -2.39 -0.02 -0.06 16 11 C -0.10 -5.05 6.31 31.98 0.20 -4.85 16 12 C 0.05 2.09 5.40 86.77 0.47 2.55 16 13 N -0.53 -20.23 5.03 -860.37 -4.33 -24.56 16 14 C 0.08 2.47 1.53 44.91 0.07 2.54 16 15 C -0.11 -3.02 5.07 30.59 0.16 -2.87 16 16 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 17 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 18 C -0.11 -2.28 5.92 30.58 0.18 -2.09 16 19 C -0.11 -2.71 5.08 30.57 0.16 -2.55 16 20 C 0.06 2.74 5.73 86.65 0.50 3.23 16 21 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 22 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 23 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 26 H 0.02 0.62 8.10 -2.38 -0.02 0.61 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.48 6.50 -2.39 -0.02 1.46 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.47 7.03 -2.39 -0.02 1.45 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.04 1.66 6.35 -2.39 -0.02 1.64 16 38 H 0.06 2.70 7.61 -2.39 -0.02 2.68 16 Total: -1.00 -61.08 288.93 1.71 -59.38 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.99 Total: 9.10 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 2.73 Total: -35.47 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -4.05 Total: -79.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.08 1.71 -59.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.702 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds