Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46915 * 300.00075 * 3 2 1 6 6 H 1.48499 * 109.47087 * 60.00084 * 3 2 1 7 7 C 1.37881 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99858 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.34727 * 57.86296 * 9 7 2 11 11 C 1.54593 * 110.31181 * 295.72209 * 9 7 2 12 12 C 1.54939 * 102.91911 * 219.12606 * 11 9 7 13 13 N 1.48533 * 103.22943 * 37.41410 * 12 11 9 14 14 C 1.46897 * 111.00053 * 200.27808 * 13 12 11 15 15 C 1.52997 * 109.47235 * 300.89366 * 14 13 12 16 16 C 1.52998 * 109.47371 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47122 * 59.99952 * 16 15 14 18 18 C 1.53006 * 109.47104 * 300.00206 * 17 16 15 19 19 C 1.52996 * 109.46930 * 59.99863 * 18 17 16 20 20 C 1.47904 * 105.81657 * 320.79012 * 13 12 11 21 21 H 0.96996 * 120.00266 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.72137 * 337.48133 * 11 9 7 23 23 H 1.09000 * 110.72886 * 100.76699 * 11 9 7 24 24 H 1.08996 * 110.66505 * 278.97516 * 12 11 9 25 25 H 1.09006 * 110.66338 * 155.84893 * 12 11 9 26 26 H 1.09006 * 109.46747 * 60.89380 * 14 13 12 27 27 H 1.08996 * 109.47353 * 300.00216 * 15 14 13 28 28 H 1.09000 * 109.47150 * 60.00120 * 15 14 13 29 29 H 1.09005 * 109.47350 * 300.00347 * 16 15 14 30 30 H 1.08996 * 109.47300 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47583 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47419 * 59.99968 * 17 16 15 33 33 H 1.09002 * 109.46690 * 299.99605 * 18 17 16 34 34 H 1.09000 * 109.47218 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.46829 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47645 * 60.00326 * 19 18 17 37 37 H 1.08996 * 109.92032 * 265.97899 * 20 13 12 38 38 H 1.09004 * 110.07801 * 144.77271 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5904 -2.5554 -0.8657 11 6 0.4383 -2.6496 1.3059 12 6 0.6033 -4.1523 1.6454 13 7 2.0065 -4.4379 1.2508 14 6 2.2124 -5.8775 1.0434 15 6 1.8835 -6.6308 2.3339 16 6 2.0974 -8.1303 2.1178 17 6 3.5562 -8.3874 1.7348 18 6 3.8851 -7.6340 0.4443 19 6 3.6712 -6.1346 0.6605 20 6 2.2345 -3.6841 -0.0012 21 1 -0.4850 0.8400 0.0004 22 1 0.8591 -2.0273 2.0957 23 1 -0.6105 -2.4049 1.1381 24 1 -0.0911 -4.7569 1.0620 25 1 0.4613 -4.3234 2.7125 26 1 1.5600 -6.2262 0.2428 27 1 2.5358 -6.2821 3.1345 28 1 0.8441 -6.4480 2.6065 29 1 1.4448 -8.4788 1.3172 30 1 1.8627 -8.6670 3.0370 31 1 3.7086 -9.4556 1.5804 32 1 4.2089 -8.0389 2.5353 33 1 3.2325 -7.9826 -0.3562 34 1 4.9245 -7.8168 0.1717 35 1 3.9059 -5.5979 -0.2588 36 1 4.3238 -5.7861 1.4609 37 1 2.0424 -4.3256 -0.8611 38 1 3.2598 -3.3156 -0.0346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084453590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -24.969397 kcal Electronic energy + Delta-G solvation = -15935.279019 eV Core-core repulsion = 13583.083110 eV Total energy + Delta-G solvation = -2352.195909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12185 -36.70171 -33.02879 -30.93878 -30.76034 -28.14761 -27.47859 -24.32921 -22.38233 -21.89947 -20.03568 -19.46206 -19.05336 -16.43474 -15.86719 -14.67399 -14.46789 -14.35519 -14.00714 -13.71604 -13.07415 -12.92917 -12.29793 -12.04851 -11.91511 -11.71062 -11.25445 -11.02513 -10.96411 -10.84653 -10.69628 -10.61263 -10.39498 -10.29071 -9.87078 -9.71375 -9.59316 -9.20867 -8.72700 -8.36021 -7.61826 -5.96935 -3.98286 3.33259 3.41145 3.45770 4.48243 4.55245 4.86387 4.86916 5.14059 5.34006 5.37480 5.47249 5.61018 5.63168 5.65608 5.75069 5.84426 5.96927 6.08298 6.10119 6.20308 6.22129 6.27663 6.30933 6.35173 6.43880 6.47330 6.64330 6.69050 6.95092 7.19398 7.27533 7.54192 7.70576 7.91750 7.96348 8.09036 8.49973 9.03492 9.64894 11.13366 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053734 B = 0.006271 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.962170 B = 4464.064653 C = 4770.280485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.092 4.092 12 C 0.031 3.969 13 N -0.513 5.513 14 C 0.078 3.922 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.110 4.110 20 C 0.047 3.953 21 H 0.258 0.742 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.017 0.983 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -14.047 2.919 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.130 4.130 12 C -0.097 4.097 13 N -0.237 5.237 14 C -0.031 4.031 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.080 4.080 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.118 -13.763 3.316 14.743 hybrid contribution -0.206 0.672 -0.670 0.971 sum 3.912 -13.091 2.646 13.917 Atomic orbital electron populations 1.69975 1.05903 1.26282 1.50957 1.24982 0.94833 0.99039 0.95266 0.86568 0.80221 0.83959 0.77450 1.19772 1.21180 1.21100 1.21223 0.92742 0.90185 1.50122 0.92471 1.19504 0.92557 0.92037 0.93946 0.95373 1.22403 1.00132 0.90681 0.99825 1.23314 0.88358 0.99121 0.98881 1.64758 1.23088 1.05135 1.30718 1.21758 0.95965 0.89513 0.95883 1.21576 1.01518 0.93823 0.97975 1.21525 0.96576 0.96546 1.00900 1.21534 0.96775 0.99322 0.97937 1.21531 1.00856 0.95720 0.97456 1.21547 0.96428 0.94971 1.01877 1.23040 1.01615 0.95272 0.88065 0.93208 0.92058 0.92429 0.95514 0.91916 0.95056 0.91331 0.92159 0.92389 0.92250 0.92557 0.91990 0.92392 0.92196 0.91948 0.91325 0.96449 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 12.63 55.43 0.70 -25.28 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -14.08 8.38 -34.44 -0.29 -14.37 16 8 H 0.06 1.59 7.34 -52.48 -0.39 1.20 16 9 C 0.04 0.98 2.87 -90.42 -0.26 0.72 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.20 5.75 -24.87 -0.14 -2.34 16 12 C 0.03 0.61 5.37 -1.90 -0.01 0.60 16 13 N -0.51 -10.09 5.11 -222.50 -1.14 -11.23 16 14 C 0.08 1.25 1.63 -67.72 -0.11 1.14 16 15 C -0.11 -1.54 5.04 -26.73 -0.13 -1.67 16 16 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 17 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 18 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 16 19 C -0.11 -1.60 5.16 -26.73 -0.14 -1.74 16 20 C 0.05 1.03 5.15 -2.75 -0.01 1.02 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.06 1.58 7.86 -51.93 -0.41 1.17 16 23 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 24 H 0.03 0.51 8.01 -51.93 -0.42 0.10 16 25 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 26 H 0.03 0.53 7.98 -51.93 -0.41 0.12 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.96 7.27 -51.93 -0.38 0.58 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 38 H 0.07 1.55 7.39 -51.93 -0.38 1.17 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -28.40 288.82 -9.67 -38.08 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.90 Total: -3.06 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.67 Total: -19.46 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.44 Total: -36.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.40 -9.67 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.108 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds