Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46915 * 300.00075 * 3 2 1 6 6 H 1.48499 * 109.47087 * 60.00084 * 3 2 1 7 7 C 1.37881 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99858 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.34727 * 57.86296 * 9 7 2 11 11 C 1.54593 * 110.31181 * 295.72209 * 9 7 2 12 12 C 1.54939 * 102.91911 * 219.12606 * 11 9 7 13 13 N 1.48533 * 103.22943 * 37.41410 * 12 11 9 14 14 C 1.46897 * 111.00053 * 200.27808 * 13 12 11 15 15 C 1.52997 * 109.47235 * 300.89366 * 14 13 12 16 16 C 1.52998 * 109.47371 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47122 * 59.99952 * 16 15 14 18 18 C 1.53006 * 109.47104 * 300.00206 * 17 16 15 19 19 C 1.52996 * 109.46930 * 59.99863 * 18 17 16 20 20 C 1.47904 * 105.81657 * 320.79012 * 13 12 11 21 21 H 0.96996 * 120.00266 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.72137 * 337.48133 * 11 9 7 23 23 H 1.09000 * 110.72886 * 100.76699 * 11 9 7 24 24 H 1.08996 * 110.66505 * 278.97516 * 12 11 9 25 25 H 1.09006 * 110.66338 * 155.84893 * 12 11 9 26 26 H 1.09006 * 109.46747 * 60.89380 * 14 13 12 27 27 H 1.08996 * 109.47353 * 300.00216 * 15 14 13 28 28 H 1.09000 * 109.47150 * 60.00120 * 15 14 13 29 29 H 1.09005 * 109.47350 * 300.00347 * 16 15 14 30 30 H 1.08996 * 109.47300 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47583 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47419 * 59.99968 * 17 16 15 33 33 H 1.09002 * 109.46690 * 299.99605 * 18 17 16 34 34 H 1.09000 * 109.47218 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.46829 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47645 * 60.00326 * 19 18 17 37 37 H 1.08996 * 109.92032 * 265.97899 * 20 13 12 38 38 H 1.09004 * 110.07801 * 144.77271 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5904 -2.5554 -0.8657 11 6 0.4383 -2.6496 1.3059 12 6 0.6033 -4.1523 1.6454 13 7 2.0065 -4.4379 1.2508 14 6 2.2124 -5.8775 1.0434 15 6 1.8835 -6.6308 2.3339 16 6 2.0974 -8.1303 2.1178 17 6 3.5562 -8.3874 1.7348 18 6 3.8851 -7.6340 0.4443 19 6 3.6712 -6.1346 0.6605 20 6 2.2345 -3.6841 -0.0012 21 1 -0.4850 0.8400 0.0004 22 1 0.8591 -2.0273 2.0957 23 1 -0.6105 -2.4049 1.1381 24 1 -0.0911 -4.7569 1.0620 25 1 0.4613 -4.3234 2.7125 26 1 1.5600 -6.2262 0.2428 27 1 2.5358 -6.2821 3.1345 28 1 0.8441 -6.4480 2.6065 29 1 1.4448 -8.4788 1.3172 30 1 1.8627 -8.6670 3.0370 31 1 3.7086 -9.4556 1.5804 32 1 4.2089 -8.0389 2.5353 33 1 3.2325 -7.9826 -0.3562 34 1 4.9245 -7.8168 0.1717 35 1 3.9059 -5.5979 -0.2588 36 1 4.3238 -5.7861 1.4609 37 1 2.0424 -4.3256 -0.8611 38 1 3.2598 -3.3156 -0.0346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084453590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -41.273256 kcal Electronic energy + Delta-G solvation = -15935.986008 eV Core-core repulsion = 13583.083110 eV Total energy + Delta-G solvation = -2352.902898 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51493 -38.12140 -34.96057 -32.57338 -31.83466 -29.92207 -28.96674 -26.31090 -23.53717 -23.22104 -21.47281 -20.98486 -20.57445 -18.55736 -17.24774 -16.45645 -16.11460 -15.70804 -15.08116 -14.90829 -14.63451 -14.42632 -13.86419 -13.57248 -13.40605 -13.04347 -12.96162 -12.73013 -12.45040 -12.43499 -12.14773 -12.05212 -11.94942 -11.58386 -11.39458 -11.21723 -11.03981 -10.82065 -10.80570 -10.50940 -9.21931 -8.13632 -6.22309 1.40048 1.41621 1.53672 2.43453 3.11547 3.19059 3.80450 3.87228 4.06892 4.21344 4.27153 4.33204 4.44706 4.49272 4.52167 4.57495 4.65769 4.67570 4.77141 4.84649 4.98340 5.02505 5.17517 5.17759 5.24904 5.30605 5.32114 5.35677 5.37868 5.41437 5.56681 5.59622 5.73048 5.84151 6.18750 6.33927 6.42252 6.86026 7.44461 8.96481 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053734 B = 0.006271 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.962170 B = 4464.064653 C = 4770.280485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.029 3.971 10 H -0.003 1.003 11 C -0.085 4.085 12 C 0.045 3.955 13 N -0.520 5.520 14 C 0.075 3.925 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.109 4.109 20 C 0.062 3.938 21 H 0.260 0.740 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -15.552 3.554 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.123 4.123 12 C -0.083 4.083 13 N -0.245 5.245 14 C -0.033 4.033 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.066 4.066 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.066 -15.285 3.952 16.580 hybrid contribution -0.516 1.132 -0.887 1.528 sum 4.550 -14.153 3.065 15.179 Atomic orbital electron populations 1.70091 1.07276 1.27203 1.51561 1.25766 0.95686 1.02477 0.94830 0.85533 0.79089 0.79611 0.77602 1.19140 1.20539 1.20601 1.21525 0.92751 0.91607 1.50301 0.92925 1.19501 0.93054 0.93032 0.93426 0.98449 1.22175 0.98403 0.93487 0.98281 1.23177 0.88865 0.95931 1.00296 1.64755 1.22739 1.07563 1.29397 1.21916 0.97019 0.87166 0.97229 1.21556 1.01205 0.95498 0.96269 1.21514 0.97200 0.94435 1.01970 1.21539 0.96198 1.00439 0.97170 1.21512 1.01878 0.93388 0.98321 1.21535 0.95044 0.97219 1.00855 1.22742 0.99873 0.94334 0.89628 0.93062 0.94389 0.94251 0.94545 0.89805 0.95537 0.91761 0.92390 0.92125 0.90445 0.90410 0.91878 0.92167 0.90789 0.93385 0.91934 0.95672 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.84 12.63 21.45 0.27 -54.57 16 2 C 0.01 0.62 5.34 84.66 0.45 1.07 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.52 -29.92 8.38 25.60 0.21 -29.71 16 8 H 0.05 2.98 7.34 -2.91 -0.02 2.96 16 9 C 0.03 1.52 2.87 -10.66 -0.03 1.49 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 11 C -0.08 -4.17 5.75 31.80 0.18 -3.98 16 12 C 0.04 1.76 5.37 86.65 0.47 2.22 16 13 N -0.52 -20.19 5.11 -857.86 -4.38 -24.57 16 14 C 0.08 2.31 1.63 44.91 0.07 2.38 16 15 C -0.11 -2.73 5.04 30.59 0.15 -2.57 16 16 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 17 C -0.12 -2.06 5.92 30.60 0.18 -1.88 16 18 C -0.11 -2.33 5.92 30.60 0.18 -2.14 16 19 C -0.11 -2.99 5.16 30.59 0.16 -2.83 16 20 C 0.06 2.74 5.15 86.45 0.44 3.18 16 21 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.04 2.00 7.86 -2.39 -0.02 1.98 16 23 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16 24 H 0.04 1.36 8.01 -2.39 -0.02 1.34 16 25 H 0.08 2.94 7.66 -2.38 -0.02 2.93 16 26 H 0.03 0.86 7.98 -2.38 -0.02 0.84 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.49 6.92 -2.39 -0.02 1.47 16 29 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.44 7.27 -2.38 -0.02 1.42 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.02 1.05 7.64 -2.39 -0.02 1.03 16 38 H 0.06 2.75 7.39 -2.39 -0.02 2.73 16 Total: -1.00 -61.37 288.82 1.56 -59.81 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.99 Total: 7.32 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 2.66 Total: -34.77 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -4.11 Total: -79.14 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.37 1.56 -59.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084453590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.533 kcal (2) G-P(sol) polarization free energy of solvation -61.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds