Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99645 * 2 1 4 4 H 1.48506 * 109.46917 * 240.00109 * 3 2 1 5 5 H 1.48490 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46918 * 120.00598 * 3 2 1 7 7 C 1.37873 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00109 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.47955 * 110.99903 * 189.99994 * 10 9 7 12 12 C 1.53926 * 86.22094 * 137.55799 * 11 10 9 13 13 C 1.47944 * 111.00272 * 289.37506 * 10 9 7 14 14 C 1.50670 * 113.94415 * 90.73038 * 12 11 10 15 15 C 1.54651 * 109.19666 * 224.25337 * 14 12 11 16 16 C 1.45965 * 111.43407 * 283.93969 * 15 14 12 17 17 C 1.53449 * 113.48267 * 62.33011 * 16 15 14 18 18 C 1.50595 * 108.54603 * 276.73043 * 17 16 15 19 19 C 1.54019 * 111.31867 * 94.50709 * 18 17 16 20 20 H 0.96995 * 119.99828 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46993 * 60.00448 * 9 7 2 22 22 H 1.08996 * 109.47351 * 299.99505 * 9 7 2 23 23 H 1.08995 * 113.75317 * 23.23111 * 11 10 9 24 24 H 1.08997 * 113.84797 * 251.89528 * 11 10 9 25 25 H 1.08999 * 113.75372 * 108.13531 * 13 10 9 26 26 H 1.08997 * 113.75331 * 336.78457 * 13 10 9 27 27 H 1.09002 * 109.52524 * 104.31849 * 14 12 11 28 28 H 1.08998 * 109.52348 * 344.18418 * 14 12 11 29 29 H 1.08991 * 109.09072 * 44.44911 * 15 14 12 30 30 H 1.09005 * 109.08534 * 163.50673 * 15 14 12 31 31 H 1.08998 * 108.68595 * 183.36626 * 16 15 14 32 32 H 1.09004 * 108.68301 * 301.43074 * 16 15 14 33 33 H 1.08997 * 109.62623 * 36.44741 * 17 16 15 34 34 H 1.08999 * 109.62686 * 157.01310 * 17 16 15 35 35 H 1.09000 * 109.11488 * 214.98436 * 18 17 16 36 36 H 1.09003 * 109.10672 * 334.09864 * 18 17 16 37 37 H 1.08996 * 108.90022 * 79.74015 * 19 18 17 38 38 H 1.08993 * 108.90314 * 198.34462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5162 -4.9028 -0.2373 12 6 2.6912 -5.2423 -1.1718 13 6 2.8976 -3.7216 -1.3020 14 6 3.8304 -5.9532 -0.4884 15 6 5.1685 -5.3284 -0.9477 16 6 5.5267 -5.7649 -2.2937 17 6 4.5145 -5.3374 -3.3648 18 6 3.3860 -6.3344 -3.3825 19 6 2.2141 -5.8694 -2.4978 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8881 22 1 0.6249 -2.5564 0.8920 23 1 0.5611 -4.8003 -0.7523 24 1 1.4576 -5.5414 0.6440 25 1 3.9434 -3.4159 -1.2701 26 1 2.3472 -3.2728 -2.1289 27 1 3.8118 -7.0103 -0.7537 28 1 3.7305 -5.8469 0.5918 29 1 5.0768 -4.2424 -0.9377 30 1 5.9567 -5.6258 -0.2560 31 1 6.5012 -5.3482 -2.5482 32 1 5.6005 -6.8524 -2.3001 33 1 4.1250 -4.3478 -3.1262 34 1 5.0003 -5.3172 -4.3404 35 1 3.0334 -6.4563 -4.4066 36 1 3.7511 -7.2932 -3.0144 37 1 1.6283 -5.1320 -3.0466 38 1 1.5800 -6.7267 -2.2723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = 17.850615 kcal Electronic energy + Delta-G solvation = -16225.493013 eV Core-core repulsion = 13875.153918 eV Total energy + Delta-G solvation = -2350.339094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43140 -36.58028 -32.94944 -32.26077 -30.87893 -27.52704 -25.63755 -24.74185 -24.46450 -22.12905 -20.50822 -19.40316 -17.47139 -16.39641 -15.67560 -15.52794 -14.64872 -14.35118 -13.82128 -13.50476 -13.19893 -12.97843 -12.73868 -12.14793 -12.05312 -11.75736 -11.63410 -11.23153 -10.94215 -10.71339 -10.57544 -10.38262 -10.33004 -10.13668 -10.12002 -10.00149 -9.43250 -9.23505 -9.06758 -8.43537 -7.58535 -6.01459 -4.02932 3.34013 3.37753 3.41036 4.43962 4.70000 4.78422 4.88455 5.18812 5.22419 5.33790 5.34340 5.44213 5.50816 5.61393 5.72132 5.89149 5.98398 6.06295 6.15235 6.18652 6.21114 6.27174 6.32486 6.35347 6.41199 6.42207 6.52848 6.58294 6.72530 6.78458 6.87949 6.99671 7.31438 7.70861 7.95616 8.22681 8.50726 9.04677 9.61281 11.09863 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.007374 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.223298 B = 3796.329995 C = 4049.428494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.161 3.839 10 N -0.476 5.476 11 C 0.003 3.997 12 C -0.087 4.087 13 C 0.021 3.979 14 C -0.078 4.078 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.112 4.112 19 C -0.105 4.105 20 H 0.261 0.739 21 H -0.004 1.004 22 H 0.029 0.971 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -12.439 -5.503 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.198 5.198 11 C -0.127 4.127 12 C -0.088 4.088 13 C -0.107 4.107 14 C -0.116 4.116 15 C -0.166 4.166 16 C -0.149 4.149 17 C -0.163 4.163 18 C -0.150 4.150 19 C -0.143 4.143 20 H 0.071 0.929 21 H 0.013 0.987 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.593 -12.188 -4.886 15.168 hybrid contribution -0.337 1.014 -0.715 1.285 sum 7.257 -11.174 -5.601 14.453 Atomic orbital electron populations 1.69953 1.06065 1.26832 1.51027 1.24994 0.94862 0.99313 0.95422 0.86572 0.79468 0.82791 0.78661 1.20276 1.21324 1.20150 1.21070 0.93355 0.90068 1.50120 0.92141 1.20177 0.91125 0.89007 0.96240 1.68500 1.20990 1.01687 1.28636 1.23992 0.95532 0.95269 0.97888 1.22139 0.96066 0.96134 0.94429 1.24133 1.00685 0.92641 0.93253 1.20989 0.92789 0.97850 0.99925 1.20732 0.96937 1.02829 0.96101 1.20395 0.98446 1.00475 0.95534 1.21330 0.96233 1.00706 0.98027 1.21327 0.96027 0.98746 0.98900 1.22031 0.97209 1.00043 0.95055 0.92897 0.98665 0.95297 0.92482 0.90938 0.89773 0.92163 0.92664 0.91302 0.90171 0.92682 0.93072 0.92964 0.90476 0.92665 0.92858 0.92460 0.92225 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.67 8.84 -34.44 -0.30 -14.97 16 8 H 0.06 1.73 7.80 -52.48 -0.41 1.32 16 9 C 0.16 4.33 4.58 -4.97 -0.02 4.31 16 10 N -0.48 -10.59 6.17 -239.18 -1.48 -12.07 16 11 C 0.00 0.05 6.92 -2.77 -0.02 0.03 16 12 C -0.09 -1.37 0.76 -154.05 -0.12 -1.49 16 13 C 0.02 0.41 4.31 -2.73 -0.01 0.40 16 14 C -0.08 -1.10 5.07 -27.03 -0.14 -1.24 16 15 C -0.13 -1.71 5.27 -29.20 -0.15 -1.86 16 16 C -0.11 -1.30 5.19 -29.83 -0.15 -1.45 16 17 C -0.13 -1.53 5.58 -27.70 -0.15 -1.68 16 18 C -0.11 -1.33 5.44 -27.40 -0.15 -1.48 16 19 C -0.11 -1.44 5.03 -25.55 -0.13 -1.57 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.00 -0.13 7.69 -51.93 -0.40 -0.53 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 24 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 25 H 0.08 1.59 4.79 -51.93 -0.25 1.35 16 26 H 0.06 1.25 7.36 -51.93 -0.38 0.87 16 27 H 0.05 0.69 7.46 -51.93 -0.39 0.31 16 28 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 29 H 0.08 1.22 5.03 -51.93 -0.26 0.96 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.56 7.34 -51.93 -0.38 0.18 16 33 H 0.08 1.08 5.24 -51.93 -0.27 0.81 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.63 6.88 -51.93 -0.36 0.28 16 37 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -29.84 280.61 -9.37 -39.21 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.38 Total: -2.37 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.45 Total: -19.50 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.74 Total: -38.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.84 -9.37 -39.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.061 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds