Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99645 * 2 1 4 4 H 1.48506 * 109.46917 * 240.00109 * 3 2 1 5 5 H 1.48490 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46918 * 120.00598 * 3 2 1 7 7 C 1.37873 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00109 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.47955 * 110.99903 * 189.99994 * 10 9 7 12 12 C 1.53926 * 86.22094 * 137.55799 * 11 10 9 13 13 C 1.47944 * 111.00272 * 289.37506 * 10 9 7 14 14 C 1.50670 * 113.94415 * 90.73038 * 12 11 10 15 15 C 1.54651 * 109.19666 * 224.25337 * 14 12 11 16 16 C 1.45965 * 111.43407 * 283.93969 * 15 14 12 17 17 C 1.53449 * 113.48267 * 62.33011 * 16 15 14 18 18 C 1.50595 * 108.54603 * 276.73043 * 17 16 15 19 19 C 1.54019 * 111.31867 * 94.50709 * 18 17 16 20 20 H 0.96995 * 119.99828 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46993 * 60.00448 * 9 7 2 22 22 H 1.08996 * 109.47351 * 299.99505 * 9 7 2 23 23 H 1.08995 * 113.75317 * 23.23111 * 11 10 9 24 24 H 1.08997 * 113.84797 * 251.89528 * 11 10 9 25 25 H 1.08999 * 113.75372 * 108.13531 * 13 10 9 26 26 H 1.08997 * 113.75331 * 336.78457 * 13 10 9 27 27 H 1.09002 * 109.52524 * 104.31849 * 14 12 11 28 28 H 1.08998 * 109.52348 * 344.18418 * 14 12 11 29 29 H 1.08991 * 109.09072 * 44.44911 * 15 14 12 30 30 H 1.09005 * 109.08534 * 163.50673 * 15 14 12 31 31 H 1.08998 * 108.68595 * 183.36626 * 16 15 14 32 32 H 1.09004 * 108.68301 * 301.43074 * 16 15 14 33 33 H 1.08997 * 109.62623 * 36.44741 * 17 16 15 34 34 H 1.08999 * 109.62686 * 157.01310 * 17 16 15 35 35 H 1.09000 * 109.11488 * 214.98436 * 18 17 16 36 36 H 1.09003 * 109.10672 * 334.09864 * 18 17 16 37 37 H 1.08996 * 108.90022 * 79.74015 * 19 18 17 38 38 H 1.08993 * 108.90314 * 198.34462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5162 -4.9028 -0.2373 12 6 2.6912 -5.2423 -1.1718 13 6 2.8976 -3.7216 -1.3020 14 6 3.8304 -5.9532 -0.4884 15 6 5.1685 -5.3284 -0.9477 16 6 5.5267 -5.7649 -2.2937 17 6 4.5145 -5.3374 -3.3648 18 6 3.3860 -6.3344 -3.3825 19 6 2.2141 -5.8694 -2.4978 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8881 22 1 0.6249 -2.5564 0.8920 23 1 0.5611 -4.8003 -0.7523 24 1 1.4576 -5.5414 0.6440 25 1 3.9434 -3.4159 -1.2701 26 1 2.3472 -3.2728 -2.1289 27 1 3.8118 -7.0103 -0.7537 28 1 3.7305 -5.8469 0.5918 29 1 5.0768 -4.2424 -0.9377 30 1 5.9567 -5.6258 -0.2560 31 1 6.5012 -5.3482 -2.5482 32 1 5.6005 -6.8524 -2.3001 33 1 4.1250 -4.3478 -3.1262 34 1 5.0003 -5.3172 -4.3404 35 1 3.0334 -6.4563 -4.4066 36 1 3.7511 -7.2932 -3.0144 37 1 1.6283 -5.1320 -3.0466 38 1 1.5800 -6.7267 -2.2723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = -1.318845 kcal Electronic energy + Delta-G solvation = -16226.324263 eV Core-core repulsion = 13875.153918 eV Total energy + Delta-G solvation = -2351.170345 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84235 -37.87635 -35.06955 -33.30596 -32.44186 -29.34129 -27.22023 -26.20314 -25.79220 -23.73322 -21.91172 -20.62503 -18.81896 -18.58535 -17.02514 -16.97541 -16.36284 -15.79546 -15.19833 -14.86071 -14.77472 -14.28644 -13.88575 -13.85915 -13.51485 -13.42791 -13.01024 -12.79437 -12.61274 -12.48986 -12.21605 -11.96254 -11.47258 -11.44371 -11.31463 -11.12210 -11.08208 -10.75418 -10.72451 -10.62686 -9.40436 -8.26037 -6.37239 1.36371 1.40318 1.48481 2.36372 3.06325 3.29626 3.39577 3.79591 4.02366 4.16807 4.25013 4.32613 4.36436 4.46630 4.59923 4.62660 4.69987 4.73855 4.82960 4.91202 4.95376 5.01526 5.09689 5.15455 5.18175 5.26179 5.37255 5.40966 5.45769 5.49304 5.53870 5.57436 5.67046 5.74900 5.81383 6.15767 6.46733 6.78448 7.32862 8.85736 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.007374 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.223298 B = 3796.329995 C = 4049.428494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.178 3.822 10 N -0.492 5.492 11 C -0.004 4.004 12 C -0.060 4.060 13 C 0.021 3.979 14 C -0.077 4.077 15 C -0.125 4.125 16 C -0.109 4.109 17 C -0.129 4.129 18 C -0.107 4.107 19 C -0.104 4.104 20 H 0.266 0.734 21 H -0.033 1.033 22 H -0.004 1.004 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -13.625 -6.217 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.050 3.950 10 N -0.214 5.214 11 C -0.133 4.133 12 C -0.060 4.060 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.162 4.162 16 C -0.147 4.147 17 C -0.166 4.166 18 C -0.145 4.145 19 C -0.142 4.142 20 H 0.074 0.926 21 H -0.015 1.015 22 H 0.014 0.986 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.493 -13.393 -5.603 17.346 hybrid contribution -0.956 1.351 -0.478 1.723 sum 8.537 -12.042 -6.081 15.965 Atomic orbital electron populations 1.70086 1.07800 1.28085 1.51501 1.25970 0.95809 1.03388 0.94546 0.85416 0.78217 0.77686 0.79213 1.19080 1.20457 1.19255 1.21370 0.93414 0.91294 1.50594 0.92320 1.19823 0.91160 0.90732 0.93251 1.68434 1.20564 1.01634 1.30772 1.24121 0.96190 0.93562 0.99396 1.22018 0.95145 0.93856 0.94987 1.24150 0.99987 0.95795 0.90846 1.21028 0.92283 0.99178 0.98973 1.20695 0.96815 1.01004 0.97702 1.20374 0.98561 1.01666 0.94072 1.21355 0.96710 0.99445 0.99109 1.21312 0.94829 0.99186 0.99139 1.22013 0.98340 0.99981 0.93875 0.92560 1.01491 0.98588 0.93417 0.89441 0.89401 0.94481 0.89924 0.92488 0.92806 0.91264 0.92189 0.90999 0.93073 0.91156 0.91595 0.90586 0.94010 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -31.55 8.84 25.60 0.23 -31.32 16 8 H 0.06 3.44 7.80 -2.91 -0.02 3.42 16 9 C 0.18 10.09 4.58 85.56 0.39 10.48 16 10 N -0.49 -22.69 6.17 -910.63 -5.62 -28.32 16 11 C 0.00 -0.14 6.92 86.40 0.60 0.46 16 12 C -0.06 -1.83 0.76 -51.85 -0.04 -1.87 16 13 C 0.02 0.82 4.31 86.44 0.37 1.19 16 14 C -0.08 -2.00 5.07 30.40 0.15 -1.84 16 15 C -0.13 -3.04 5.27 29.00 0.15 -2.89 16 16 C -0.11 -2.20 5.19 28.59 0.15 -2.05 16 17 C -0.13 -2.82 5.58 29.97 0.17 -2.66 16 18 C -0.11 -2.19 5.44 30.16 0.16 -2.03 16 19 C -0.10 -2.69 5.03 31.36 0.16 -2.53 16 20 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 21 H -0.03 -1.99 7.69 -2.39 -0.02 -2.00 16 22 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 24 H 0.09 2.98 8.00 -2.39 -0.02 2.96 16 25 H 0.09 3.42 4.79 -2.39 -0.01 3.41 16 26 H 0.04 1.63 7.36 -2.39 -0.02 1.61 16 27 H 0.08 1.73 7.46 -2.39 -0.02 1.72 16 28 H 0.06 1.62 7.76 -2.39 -0.02 1.61 16 29 H 0.05 1.60 5.03 -2.39 -0.01 1.59 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.21 7.34 -2.39 -0.02 1.20 16 33 H 0.05 1.40 5.24 -2.39 -0.01 1.38 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.31 6.88 -2.39 -0.02 1.30 16 37 H 0.04 1.22 7.64 -2.39 -0.02 1.20 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.05 280.61 0.66 -65.39 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.01 Total: 7.77 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 2.96 Total: -34.54 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -5.34 Total: -86.20 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -66.05 0.66 -65.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.069 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds