Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00148 * 2 1 4 4 C 1.53001 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46879 * 179.97438 * 4 3 2 6 6 C 1.34675 * 125.98512 * 125.00042 * 5 4 3 7 7 N 1.36879 * 106.81522 * 179.97438 * 6 5 4 8 8 C 1.46499 * 126.39849 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47021 * 89.99861 * 8 7 6 10 10 C 1.50702 * 109.47160 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00227 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99950 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00070 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47455 * 89.99757 * 14 12 10 16 16 H 1.48504 * 109.47069 * 210.00004 * 14 12 10 17 17 H 1.48507 * 109.47160 * 329.99597 * 14 12 10 18 18 C 1.35041 * 107.20828 * 0.02562 * 7 6 5 19 19 N 1.30503 * 108.69928 * 359.97438 * 18 7 6 20 20 H 1.09002 * 109.46679 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46873 * 300.00159 * 1 2 3 22 22 H 1.08992 * 109.46664 * 60.00417 * 1 2 3 23 23 H 1.00897 * 111.00248 * 236.04288 * 2 1 3 24 24 H 1.08997 * 109.46943 * 59.99432 * 3 2 1 25 25 H 1.09007 * 109.46792 * 299.99938 * 3 2 1 26 26 H 1.09002 * 109.47155 * 59.99792 * 4 3 2 27 27 H 1.08993 * 109.46997 * 299.99813 * 4 3 2 28 28 H 1.07999 * 126.59056 * 359.73822 * 6 5 4 29 29 H 1.08996 * 109.47327 * 210.00288 * 8 7 6 30 30 H 1.09002 * 109.46825 * 330.00335 * 8 7 6 31 31 H 1.08996 * 109.47418 * 300.00371 * 9 8 7 32 32 H 1.09002 * 109.46934 * 60.00540 * 9 8 7 33 33 H 0.96998 * 119.99968 * 179.97438 * 13 12 10 34 34 H 1.07997 * 125.65385 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3306 -0.0006 5 6 4.0649 2.7375 -0.0013 6 6 4.9324 3.2526 0.8909 7 7 5.1553 4.5517 0.5219 8 6 6.0319 5.5099 1.1999 9 6 7.4403 5.4192 0.6091 10 6 8.3422 6.4044 1.3070 11 1 7.9502 7.0321 2.0937 12 6 9.6678 6.5045 0.9413 13 7 10.1453 5.7398 -0.0163 14 14 10.7859 7.7251 1.8069 15 1 11.4167 7.0718 2.9817 16 1 11.8420 8.1812 0.8678 17 1 9.9878 8.8930 2.2592 18 6 4.4154 4.7857 -0.5833 19 7 3.7661 3.6961 -0.8905 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8900 23 1 1.8306 -0.5261 -0.7813 24 1 1.6459 1.8948 0.8899 25 1 1.6460 1.8948 -0.8901 26 1 3.8741 0.8074 -0.8909 27 1 3.8748 0.8072 0.8891 28 1 5.3657 2.7403 1.7372 29 1 5.6438 6.5188 1.0610 30 1 6.0689 5.2782 2.2644 31 1 7.8284 4.4102 0.7480 32 1 7.4033 5.6509 -0.4554 33 1 11.0778 5.8105 -0.2738 34 1 4.3692 5.7195 -1.1239 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087016712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = 41.756025 kcal Electronic energy + Delta-G solvation = -14468.693745 eV Core-core repulsion = 12015.850923 eV Total energy + Delta-G solvation = -2452.842821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55229 -36.53804 -34.71796 -32.82911 -31.45015 -29.54132 -27.95930 -25.27110 -24.43457 -22.27341 -21.83075 -20.27361 -19.50270 -16.93198 -15.97790 -15.90400 -15.04739 -14.67695 -14.47048 -14.10764 -13.80712 -13.66515 -12.95779 -12.83182 -12.46292 -12.30623 -11.68998 -11.60986 -11.47639 -11.09479 -11.01791 -10.81506 -10.31438 -10.09130 -9.54047 -9.36930 -8.81993 -8.55213 -8.53539 -7.87630 -6.18944 -4.25292 2.60710 3.21398 3.27927 3.30152 3.46671 3.53492 4.22028 4.31721 4.96883 5.12714 5.17216 5.24966 5.37834 5.41426 5.47147 5.52649 5.67065 5.73387 5.90881 5.96733 6.03077 6.19982 6.36497 6.39679 6.83159 6.90922 7.15501 7.29518 7.37591 7.46399 7.67883 7.83333 8.11820 8.55637 8.80556 9.40668 10.92049 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.080055 B = 0.004172 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.675064 B = 6709.549085 C = 6766.303002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.699 5.699 3 C 0.067 3.933 4 C -0.023 4.023 5 C -0.017 4.017 6 C -0.045 4.045 7 N -0.442 5.442 8 C 0.102 3.898 9 C 0.013 3.987 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.179 3.821 19 N -0.503 5.503 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.020 0.980 23 H 0.340 0.660 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.167 0.833 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 -6.544 0.972 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.330 5.330 3 C -0.062 4.062 4 C -0.062 4.062 5 C -0.148 4.148 6 C -0.180 4.180 7 N -0.121 5.121 8 C -0.018 4.018 9 C -0.024 4.024 10 C -0.570 4.570 11 H 0.078 0.922 12 C -0.141 4.141 13 N -0.526 5.526 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.104 4.104 19 N -0.222 5.222 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.157 0.843 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.184 0.816 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.639 -6.601 0.979 15.184 hybrid contribution 1.216 1.143 0.153 1.676 sum -12.422 -5.459 1.132 13.616 Atomic orbital electron populations 1.22159 0.88128 1.01474 1.00388 1.60447 1.07565 1.15101 1.49861 1.21905 0.94820 0.88430 1.01087 1.19661 0.93759 0.90356 1.02444 1.20371 1.02242 0.96357 0.95792 1.22439 1.05334 0.86036 1.04225 1.45885 1.33119 1.10827 1.22256 1.22401 0.92331 0.90254 0.96858 1.19434 0.87708 0.98356 0.96939 1.21001 0.94549 1.21333 1.20115 0.92227 1.25013 0.98197 0.95957 0.94969 1.69969 1.15075 1.38764 1.28837 0.86496 0.80341 0.81246 0.79369 1.20469 1.21038 1.19713 1.24775 0.95378 0.99850 0.90407 1.70043 1.25579 0.99591 1.27023 0.91683 0.91863 0.96111 0.84325 0.91335 0.94342 0.91474 0.90369 0.81577 0.89938 0.90175 0.95822 0.95781 0.92626 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.90 16 2 N -0.70 -7.61 6.86 -121.13 -0.83 -8.44 16 3 C 0.07 0.85 5.65 -3.82 -0.02 0.82 16 4 C -0.02 -0.32 6.04 -27.88 -0.17 -0.49 16 5 C -0.02 -0.29 6.36 -82.85 -0.53 -0.82 16 6 C -0.04 -0.77 11.47 -16.56 -0.19 -0.96 16 7 N -0.44 -8.05 2.75 -118.58 -0.33 -8.38 16 8 C 0.10 1.94 6.09 -4.04 -0.02 1.92 16 9 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 10 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C 0.18 3.16 12.56 -90.37 -1.14 2.03 16 19 N -0.50 -9.23 11.23 -10.88 -0.12 -9.35 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.34 3.26 8.81 -39.29 -0.35 2.92 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.20 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 294.23 15.07 4.43 4.43 Total: -1.00 -30.18 294.23 -8.49 -38.68 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.38 Total: 1.76 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.98 Total: -9.22 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.54 Total: -51.32 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.18 -8.49 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087016712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.433 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds