Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00148 * 2 1 4 4 C 1.53001 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46879 * 179.97438 * 4 3 2 6 6 C 1.34675 * 125.98512 * 125.00042 * 5 4 3 7 7 N 1.36879 * 106.81522 * 179.97438 * 6 5 4 8 8 C 1.46499 * 126.39849 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47021 * 89.99861 * 8 7 6 10 10 C 1.50702 * 109.47160 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00227 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99950 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00070 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47455 * 89.99757 * 14 12 10 16 16 H 1.48504 * 109.47069 * 210.00004 * 14 12 10 17 17 H 1.48507 * 109.47160 * 329.99597 * 14 12 10 18 18 C 1.35041 * 107.20828 * 0.02562 * 7 6 5 19 19 N 1.30503 * 108.69928 * 359.97438 * 18 7 6 20 20 H 1.09002 * 109.46679 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46873 * 300.00159 * 1 2 3 22 22 H 1.08992 * 109.46664 * 60.00417 * 1 2 3 23 23 H 1.00897 * 111.00248 * 236.04288 * 2 1 3 24 24 H 1.08997 * 109.46943 * 59.99432 * 3 2 1 25 25 H 1.09007 * 109.46792 * 299.99938 * 3 2 1 26 26 H 1.09002 * 109.47155 * 59.99792 * 4 3 2 27 27 H 1.08993 * 109.46997 * 299.99813 * 4 3 2 28 28 H 1.07999 * 126.59056 * 359.73822 * 6 5 4 29 29 H 1.08996 * 109.47327 * 210.00288 * 8 7 6 30 30 H 1.09002 * 109.46825 * 330.00335 * 8 7 6 31 31 H 1.08996 * 109.47418 * 300.00371 * 9 8 7 32 32 H 1.09002 * 109.46934 * 60.00540 * 9 8 7 33 33 H 0.96998 * 119.99968 * 179.97438 * 13 12 10 34 34 H 1.07997 * 125.65385 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3306 -0.0006 5 6 4.0649 2.7375 -0.0013 6 6 4.9324 3.2526 0.8909 7 7 5.1553 4.5517 0.5219 8 6 6.0319 5.5099 1.1999 9 6 7.4403 5.4192 0.6091 10 6 8.3422 6.4044 1.3070 11 1 7.9502 7.0321 2.0937 12 6 9.6678 6.5045 0.9413 13 7 10.1453 5.7398 -0.0163 14 14 10.7859 7.7251 1.8069 15 1 11.4167 7.0718 2.9817 16 1 11.8420 8.1812 0.8678 17 1 9.9878 8.8930 2.2592 18 6 4.4154 4.7857 -0.5833 19 7 3.7661 3.6961 -0.8905 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8900 23 1 1.8306 -0.5261 -0.7813 24 1 1.6459 1.8948 0.8899 25 1 1.6460 1.8948 -0.8901 26 1 3.8741 0.8074 -0.8909 27 1 3.8748 0.8072 0.8891 28 1 5.3657 2.7403 1.7372 29 1 5.6438 6.5188 1.0610 30 1 6.0689 5.2782 2.2644 31 1 7.8284 4.4102 0.7480 32 1 7.4033 5.6509 -0.4554 33 1 11.0778 5.8105 -0.2738 34 1 4.3692 5.7195 -1.1239 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087016712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = 23.392724 kcal Electronic energy + Delta-G solvation = -14469.490037 eV Core-core repulsion = 12015.850923 eV Total energy + Delta-G solvation = -2453.639114 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.91954 -37.52408 -36.34244 -34.61374 -32.68594 -31.23897 -29.21996 -26.90275 -25.55769 -23.60981 -23.29007 -21.71088 -20.81536 -18.79700 -17.50531 -16.87820 -16.69596 -16.12169 -15.69971 -15.33219 -15.08425 -14.90337 -14.50729 -14.30226 -13.90920 -13.51680 -13.24029 -12.89352 -12.77649 -12.55188 -12.40494 -12.11219 -12.08878 -11.87803 -11.45231 -10.84279 -10.63458 -10.32341 -9.41697 -9.21664 -8.26919 -6.40504 1.22771 1.41793 1.42209 1.53467 2.05945 2.18016 2.40213 3.08209 3.31429 3.75396 3.99319 4.11101 4.22144 4.30197 4.44267 4.44941 4.58117 4.64283 4.68688 4.78004 4.81125 5.03701 5.14313 5.19406 5.27362 5.34887 5.61727 5.68762 5.89583 6.01421 6.03715 6.39584 6.47723 6.76364 7.19168 7.30824 8.85153 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.080055 B = 0.004172 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.675064 B = 6709.549085 C = 6766.303002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.079 3.921 4 C -0.020 4.020 5 C -0.023 4.023 6 C -0.061 4.061 7 N -0.450 5.450 8 C 0.120 3.880 9 C 0.021 3.979 10 C -0.543 4.543 11 H 0.075 0.925 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.970 3.030 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.257 1.257 18 C 0.170 3.830 19 N -0.522 5.522 20 H 0.083 0.917 21 H 0.061 0.939 22 H 0.021 0.979 23 H 0.348 0.652 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.185 0.815 29 H 0.102 0.898 30 H 0.095 0.905 31 H -0.009 1.009 32 H -0.006 1.006 33 H 0.265 0.735 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -6.239 2.072 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.334 5.334 3 C -0.050 4.050 4 C -0.059 4.059 5 C -0.152 4.152 6 C -0.195 4.195 7 N -0.130 5.130 8 C -0.002 4.002 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.093 0.907 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.794 3.206 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.181 1.181 18 C -0.113 4.113 19 N -0.242 5.242 20 H 0.101 0.899 21 H 0.080 0.920 22 H 0.040 0.960 23 H 0.165 0.835 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.202 0.798 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.073 0.927 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.322 -6.312 2.086 15.790 hybrid contribution 1.370 0.982 -0.234 1.702 sum -12.952 -5.330 1.852 14.128 Atomic orbital electron populations 1.22225 0.86970 1.02696 1.00357 1.60435 1.08701 1.13864 1.50360 1.21685 0.94102 0.89316 0.99939 1.19719 0.94345 0.88602 1.03195 1.20899 1.01844 0.97373 0.95119 1.22879 1.05646 0.85901 1.05092 1.45868 1.33316 1.11158 1.22669 1.22090 0.89350 0.91626 0.97097 1.19241 0.90993 0.96014 0.95391 1.21495 0.95054 1.21447 1.20174 0.90700 1.26003 1.00151 0.97881 0.95649 1.70114 1.15498 1.40854 1.30771 0.85367 0.78101 0.79058 0.78051 1.19820 1.21191 1.18125 1.25331 0.94989 1.00665 0.90294 1.70072 1.26233 1.00219 1.27681 0.89854 0.92002 0.96031 0.83454 0.92092 0.95896 0.91157 0.89068 0.79832 0.87980 0.88669 0.99087 0.98794 0.92660 0.76357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.82 16 2 N -0.70 -14.20 6.86 -537.15 -3.68 -17.88 16 3 C 0.08 1.93 5.65 86.30 0.49 2.42 16 4 C -0.02 -0.52 6.04 29.85 0.18 -0.34 16 5 C -0.02 -0.75 6.36 41.39 0.26 -0.48 16 6 C -0.06 -2.05 11.47 83.09 0.95 -1.10 16 7 N -0.45 -16.07 2.75 -529.07 -1.46 -17.52 16 8 C 0.12 4.40 6.09 86.38 0.53 4.92 16 9 C 0.02 1.06 5.30 29.85 0.16 1.21 16 10 C -0.54 -28.52 9.11 25.60 0.23 -28.29 16 11 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 14 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 16 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 C 0.17 5.89 12.56 180.26 2.26 8.15 16 19 N -0.52 -18.91 11.23 -188.32 -2.12 -21.02 16 20 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.02 0.35 8.14 -2.39 -0.02 0.34 16 23 H 0.35 6.11 8.81 -89.70 -0.79 5.32 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 28 H 0.18 5.33 8.06 -2.91 -0.02 5.30 16 29 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.22 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -64.31 294.23 2.23 -62.08 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.28 Total: 16.44 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 6.89 Total: -11.13 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -6.97 Total: -111.41 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -64.31 2.23 -62.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087016712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.471 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds