Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99710 * 2 1 4 4 H 1.48496 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47457 * 300.00382 * 3 2 1 6 6 H 1.48503 * 109.46663 * 60.00323 * 3 2 1 7 7 C 1.37873 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46934 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.49090 * 110.99911 * 305.49620 * 11 10 9 13 13 C 1.55001 * 106.83838 * 214.64335 * 12 11 10 14 14 C 1.53072 * 104.21315 * 358.09895 * 13 12 11 15 15 H 1.08999 * 110.46355 * 269.76317 * 14 13 12 16 16 C 1.51765 * 116.54465 * 142.86828 * 14 13 12 17 17 C 1.53737 * 107.33977 * 182.55054 * 16 14 13 18 18 C 1.52574 * 111.48250 * 57.72922 * 17 16 14 19 19 C 1.53758 * 111.43999 * 305.26384 * 18 17 16 20 20 C 1.46650 * 110.99874 * 190.00272 * 11 10 9 21 21 H 1.08994 * 109.89302 * 45.68215 * 20 11 10 22 22 H 0.96998 * 120.00067 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47013 * 59.99792 * 9 7 2 24 24 H 1.08998 * 109.47455 * 299.99444 * 9 7 2 25 25 H 1.08999 * 109.47109 * 60.00256 * 10 9 7 26 26 H 1.08997 * 109.47583 * 299.99810 * 10 9 7 27 27 H 1.08992 * 109.98973 * 333.98870 * 12 11 10 28 28 H 1.09002 * 109.98874 * 95.29677 * 12 11 10 29 29 H 1.08995 * 110.52598 * 116.23193 * 13 12 11 30 30 H 1.08997 * 110.52833 * 238.84906 * 13 12 11 31 31 H 1.09002 * 109.89522 * 63.07052 * 16 14 13 32 32 H 1.08997 * 109.89403 * 302.02786 * 16 14 13 33 33 H 1.08997 * 109.07544 * 178.24380 * 17 16 14 34 34 H 1.08999 * 109.07523 * 297.28209 * 17 16 14 35 35 H 1.08998 * 109.08305 * 65.76598 * 18 17 16 36 36 H 1.08993 * 109.08392 * 184.82186 * 18 17 16 37 37 H 1.08997 * 109.89239 * 177.03016 * 19 18 17 38 38 H 1.08999 * 109.88959 * 298.05122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5110 -4.9342 -0.0033 12 6 0.5444 -4.9935 1.1302 13 6 0.4982 -6.4686 1.6042 14 6 1.4417 -7.2007 0.6467 15 1 0.8946 -7.5656 -0.2226 16 6 2.2844 -8.3130 1.2433 17 6 3.1895 -8.8529 0.1240 18 6 4.0614 -7.7507 -0.4700 19 6 3.2136 -6.5633 -0.9549 20 6 2.4160 -6.0636 0.2336 21 1 3.0879 -5.8334 1.0603 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6242 -2.5575 0.8880 25 1 2.8721 -3.6050 0.8873 26 1 2.8721 -3.6035 -0.8926 27 1 0.8834 -4.3515 1.9431 28 1 -0.4437 -4.6791 0.7941 29 1 0.8657 -6.5531 2.6269 30 1 -0.5154 -6.8625 1.5296 31 1 1.6389 -9.1089 1.6148 32 1 2.8946 -7.9204 2.0568 33 1 3.8311 -9.6346 0.5306 34 1 2.5671 -9.2770 -0.6639 35 1 4.7616 -7.4022 0.2892 36 1 4.6219 -8.1550 -1.3128 37 1 3.8633 -5.7704 -1.3253 38 1 2.5380 -6.8886 -1.7460 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132763838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = -24.733765 kcal Electronic energy + Delta-G solvation = -15799.475669 eV Core-core repulsion = 13447.289977 eV Total energy + Delta-G solvation = -2352.185692 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87053 -35.87298 -33.37227 -32.19963 -30.30724 -28.21900 -27.77346 -24.23266 -22.57189 -21.43973 -21.01200 -19.77028 -19.08221 -16.38087 -15.23724 -15.04339 -14.70705 -14.40631 -14.24415 -13.68741 -13.44776 -13.15510 -12.53787 -12.20124 -11.99668 -11.77894 -11.45922 -11.12579 -10.95997 -10.88282 -10.76795 -10.61257 -10.53468 -10.33307 -10.23199 -9.88229 -9.72420 -9.24406 -9.06422 -8.33275 -7.74461 -5.97899 -4.00157 3.32207 3.39477 3.43720 4.34503 4.49011 4.69794 4.79927 5.00283 5.14945 5.27398 5.35456 5.38165 5.50866 5.58548 5.61159 5.62144 5.73796 5.93317 5.97098 6.02962 6.12989 6.16608 6.18651 6.29753 6.34648 6.37071 6.40976 6.52237 6.62140 6.66270 6.98901 7.51649 7.59983 7.79820 7.91086 8.10434 8.46001 9.07199 9.63491 11.13584 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.005894 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.501134 B = 4749.691096 C = 5139.232051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.054 3.946 11 N -0.509 5.509 12 C 0.041 3.959 13 C -0.125 4.125 14 C -0.094 4.094 15 H 0.079 0.921 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.102 4.102 20 C 0.062 3.938 21 H 0.040 0.960 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -16.367 1.805 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.073 4.073 11 N -0.232 5.232 12 C -0.087 4.087 13 C -0.163 4.163 14 C -0.113 4.113 15 H 0.097 0.903 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.140 4.140 20 C -0.047 4.047 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.074 -16.263 1.282 16.815 hybrid contribution 0.877 1.185 0.800 1.677 sum 4.951 -15.079 2.082 16.007 Atomic orbital electron populations 1.69985 1.06023 1.26430 1.50875 1.24995 0.94823 0.99170 0.95334 0.86547 0.80098 0.83846 0.77575 1.19781 1.20967 1.21042 1.21236 0.93005 0.91077 1.50597 0.92774 1.19148 0.94014 0.90387 0.97778 1.22478 0.96976 0.88932 0.98903 1.64772 1.14366 1.03003 1.41074 1.23161 0.98167 0.94615 0.92761 1.22276 0.99519 0.95875 0.98613 1.21820 0.95748 0.94813 0.98909 0.90276 1.21416 0.97631 0.97728 0.97724 1.21529 0.98110 0.97689 0.98082 1.21534 0.97991 0.95747 1.00190 1.21281 0.98225 0.96887 0.97589 1.22351 0.94092 0.91666 0.96623 0.94216 0.93076 0.95798 0.96419 0.96291 0.92011 0.93328 0.90357 0.92092 0.91400 0.92027 0.92052 0.92420 0.92169 0.92420 0.92114 0.91876 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.64 4.76 -27.88 -0.13 0.51 16 10 C 0.05 1.20 4.87 -3.82 -0.02 1.19 16 11 N -0.51 -9.76 5.33 -223.02 -1.19 -10.95 16 12 C 0.04 0.73 5.39 -1.55 -0.01 0.72 16 13 C -0.12 -1.74 6.64 -25.64 -0.17 -1.91 16 14 C -0.09 -1.25 2.55 -89.96 -0.23 -1.48 16 15 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 16 C -0.11 -1.17 5.63 -26.97 -0.15 -1.32 16 17 C -0.12 -1.17 5.85 -26.57 -0.16 -1.32 16 18 C -0.12 -1.29 5.85 -26.56 -0.16 -1.44 16 19 C -0.10 -1.41 5.90 -27.05 -0.16 -1.57 16 20 C 0.06 0.97 1.62 -67.31 -0.11 0.86 16 21 H 0.04 0.66 7.70 -51.93 -0.40 0.26 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.49 6.72 -51.93 -0.35 0.14 16 25 H 0.02 0.42 7.89 -51.93 -0.41 0.01 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.05 0.93 7.26 -51.93 -0.38 0.55 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.68 8.03 -51.93 -0.42 0.27 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 292.31 15.07 4.41 4.41 Total: -1.00 -30.12 292.31 -9.74 -39.86 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.98 Total: -4.15 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.70 Total: -19.55 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.45 Total: -37.49 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.12 -9.74 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132763838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.128 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds