Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99710 * 2 1 4 4 H 1.48496 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47457 * 300.00382 * 3 2 1 6 6 H 1.48503 * 109.46663 * 60.00323 * 3 2 1 7 7 C 1.37873 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46934 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.49090 * 110.99911 * 305.49620 * 11 10 9 13 13 C 1.55001 * 106.83838 * 214.64335 * 12 11 10 14 14 C 1.53072 * 104.21315 * 358.09895 * 13 12 11 15 15 H 1.08999 * 110.46355 * 269.76317 * 14 13 12 16 16 C 1.51765 * 116.54465 * 142.86828 * 14 13 12 17 17 C 1.53737 * 107.33977 * 182.55054 * 16 14 13 18 18 C 1.52574 * 111.48250 * 57.72922 * 17 16 14 19 19 C 1.53758 * 111.43999 * 305.26384 * 18 17 16 20 20 C 1.46650 * 110.99874 * 190.00272 * 11 10 9 21 21 H 1.08994 * 109.89302 * 45.68215 * 20 11 10 22 22 H 0.96998 * 120.00067 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47013 * 59.99792 * 9 7 2 24 24 H 1.08998 * 109.47455 * 299.99444 * 9 7 2 25 25 H 1.08999 * 109.47109 * 60.00256 * 10 9 7 26 26 H 1.08997 * 109.47583 * 299.99810 * 10 9 7 27 27 H 1.08992 * 109.98973 * 333.98870 * 12 11 10 28 28 H 1.09002 * 109.98874 * 95.29677 * 12 11 10 29 29 H 1.08995 * 110.52598 * 116.23193 * 13 12 11 30 30 H 1.08997 * 110.52833 * 238.84906 * 13 12 11 31 31 H 1.09002 * 109.89522 * 63.07052 * 16 14 13 32 32 H 1.08997 * 109.89403 * 302.02786 * 16 14 13 33 33 H 1.08997 * 109.07544 * 178.24380 * 17 16 14 34 34 H 1.08999 * 109.07523 * 297.28209 * 17 16 14 35 35 H 1.08998 * 109.08305 * 65.76598 * 18 17 16 36 36 H 1.08993 * 109.08392 * 184.82186 * 18 17 16 37 37 H 1.08997 * 109.89239 * 177.03016 * 19 18 17 38 38 H 1.08999 * 109.88959 * 298.05122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5110 -4.9342 -0.0033 12 6 0.5444 -4.9935 1.1302 13 6 0.4982 -6.4686 1.6042 14 6 1.4417 -7.2007 0.6467 15 1 0.8946 -7.5656 -0.2226 16 6 2.2844 -8.3130 1.2433 17 6 3.1895 -8.8529 0.1240 18 6 4.0614 -7.7507 -0.4700 19 6 3.2136 -6.5633 -0.9549 20 6 2.4160 -6.0636 0.2336 21 1 3.0879 -5.8334 1.0603 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6242 -2.5575 0.8880 25 1 2.8721 -3.6050 0.8873 26 1 2.8721 -3.6035 -0.8926 27 1 0.8834 -4.3515 1.9431 28 1 -0.4437 -4.6791 0.7941 29 1 0.8657 -6.5531 2.6269 30 1 -0.5154 -6.8625 1.5296 31 1 1.6389 -9.1089 1.6148 32 1 2.8946 -7.9204 2.0568 33 1 3.8311 -9.6346 0.5306 34 1 2.5671 -9.2770 -0.6639 35 1 4.7616 -7.4022 0.2892 36 1 4.6219 -8.1550 -1.3128 37 1 3.8633 -5.7704 -1.3253 38 1 2.5380 -6.8886 -1.7460 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132763838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = -42.994090 kcal Electronic energy + Delta-G solvation = -15800.267496 eV Core-core repulsion = 13447.289977 eV Total energy + Delta-G solvation = -2352.977519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10972 -37.20360 -35.28992 -33.71465 -31.82505 -29.48534 -29.27344 -26.19762 -23.81647 -23.06846 -22.04068 -20.96454 -20.55167 -18.57940 -16.57885 -16.54809 -16.41726 -15.76541 -15.41732 -15.07057 -14.76750 -14.44551 -14.19811 -13.72588 -13.39353 -13.12643 -12.90471 -12.79525 -12.60356 -12.42931 -12.15335 -12.05665 -11.84281 -11.58307 -11.45890 -11.33348 -11.31385 -11.12021 -10.68586 -10.59056 -9.32477 -8.23201 -6.35318 1.37897 1.38797 1.52240 2.38123 3.05117 3.09916 3.54051 3.78151 3.90843 4.09696 4.22461 4.31638 4.38582 4.42170 4.47760 4.53074 4.58694 4.63072 4.73770 4.84218 4.93854 4.98406 5.01665 5.09188 5.14284 5.24295 5.29503 5.33847 5.39287 5.40775 5.44149 5.59307 5.61013 5.75957 5.99344 6.21030 6.31993 6.81117 7.34083 8.89275 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.005894 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.501134 B = 4749.691096 C = 5139.232051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.073 3.927 11 N -0.522 5.522 12 C 0.036 3.964 13 C -0.115 4.115 14 C -0.084 4.084 15 H 0.078 0.922 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.102 4.102 20 C 0.055 3.945 21 H 0.032 0.968 22 H 0.265 0.735 23 H -0.010 1.010 24 H -0.004 1.004 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -17.759 2.159 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.055 4.055 11 N -0.246 5.246 12 C -0.092 4.092 13 C -0.153 4.153 14 C -0.103 4.103 15 H 0.096 0.904 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.053 4.053 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.014 0.986 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.343 -17.678 1.637 18.540 hybrid contribution 0.431 1.617 0.675 1.805 sum 5.774 -16.061 2.311 17.223 Atomic orbital electron populations 1.70118 1.07861 1.27817 1.51364 1.25983 0.95777 1.03391 0.94447 0.85349 0.78967 0.78469 0.77948 1.18636 1.20146 1.20132 1.21633 0.93439 0.92304 1.51100 0.92366 1.18957 0.94155 0.92162 0.95012 1.22094 0.95667 0.89152 0.98573 1.64717 1.15224 1.02662 1.41958 1.23166 0.96772 0.97499 0.91737 1.22241 1.01018 0.92642 0.99409 1.21825 0.95080 0.94626 0.98794 0.90374 1.21419 0.97600 0.97122 0.97907 1.21533 0.98152 0.97575 0.97921 1.21514 0.97747 0.94858 1.00845 1.21313 0.98103 0.97766 0.96797 1.22506 0.94320 0.91093 0.97399 0.94971 0.92658 0.99133 0.98595 0.96573 0.92216 0.95366 0.92232 0.90641 0.89632 0.89958 0.92117 0.90265 0.91587 0.92464 0.90512 0.93332 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.94 4.76 29.85 0.14 2.08 16 10 C 0.07 3.37 4.87 86.30 0.42 3.79 16 11 N -0.52 -20.59 5.33 -859.51 -4.58 -25.17 16 12 C 0.04 1.34 5.39 86.56 0.47 1.81 16 13 C -0.12 -3.07 6.64 31.30 0.21 -2.86 16 14 C -0.08 -2.09 2.55 -10.37 -0.03 -2.12 16 15 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 16 C -0.10 -1.89 5.63 30.44 0.17 -1.72 16 17 C -0.11 -1.88 5.85 30.70 0.18 -1.70 16 18 C -0.11 -2.18 5.85 30.71 0.18 -2.00 16 19 C -0.10 -2.72 5.90 30.39 0.18 -2.54 16 20 C 0.06 1.71 1.62 45.31 0.07 1.79 16 21 H 0.03 1.05 7.70 -2.39 -0.02 1.03 16 22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 24 H 0.00 -0.26 6.72 -2.39 -0.02 -0.27 16 25 H 0.02 0.74 7.89 -2.39 -0.02 0.72 16 26 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.03 1.14 7.26 -2.39 -0.02 1.12 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.16 8.03 -2.39 -0.02 1.14 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 Total: -1.00 -66.27 292.31 1.41 -64.86 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.99 Total: 6.07 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 2.69 Total: -35.13 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -4.29 Total: -83.10 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.27 1.41 -64.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132763838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.869 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds