Wall clock time and date at job start Mon Mar 30 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47070 * 29.99956 * 3 2 1 6 6 H 1.48505 * 109.47043 * 149.99523 * 3 2 1 7 7 C 1.37879 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00088 * 359.72550 * 7 2 1 10 10 C 1.52994 * 109.47452 * 180.27710 * 9 7 2 11 11 N 1.46894 * 109.47426 * 183.67939 * 10 9 7 12 12 C 1.49248 * 110.99775 * 295.19006 * 11 10 9 13 13 C 1.55065 * 102.72499 * 198.55630 * 12 11 10 14 14 C 1.55753 * 103.12647 * 36.46435 * 13 12 11 15 15 H 1.09005 * 109.66119 * 99.96998 * 14 13 12 16 16 C 1.51615 * 107.42883 * 219.10279 * 14 13 12 17 17 C 1.52233 * 112.78621 * 152.04911 * 16 14 13 18 18 C 1.53418 * 108.14644 * 301.14994 * 17 16 14 19 19 C 1.52542 * 107.68416 * 68.11980 * 18 17 16 20 20 C 1.47396 * 111.00196 * 180.37184 * 11 10 9 21 21 H 1.09001 * 104.32196 * 40.03176 * 20 11 10 22 22 H 0.97001 * 119.99557 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47586 * 300.27775 * 9 7 2 24 24 H 1.09001 * 109.47098 * 60.27567 * 9 7 2 25 25 H 1.09009 * 109.47035 * 303.68013 * 10 9 7 26 26 H 1.09000 * 109.47381 * 63.67378 * 10 9 7 27 27 H 1.08993 * 110.76027 * 316.86606 * 12 11 10 28 28 H 1.08995 * 110.75901 * 80.25258 * 12 11 10 29 29 H 1.09009 * 110.68132 * 154.86876 * 13 12 11 30 30 H 1.08991 * 110.68941 * 277.88255 * 13 12 11 31 31 H 1.09001 * 108.82012 * 272.90387 * 16 14 13 32 32 H 1.09006 * 108.82123 * 31.19752 * 16 14 13 33 33 H 1.08998 * 109.72725 * 60.81670 * 17 16 14 34 34 H 1.09000 * 109.72957 * 181.43889 * 17 16 14 35 35 H 1.08998 * 109.81421 * 187.65796 * 18 17 16 36 36 H 1.08993 * 109.81734 * 308.57026 * 18 17 16 37 37 H 1.08993 * 108.74370 * 66.14302 * 19 18 17 38 38 H 1.09003 * 108.73820 * 184.35291 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0074 10 6 2.2450 -3.6621 0.0135 11 7 1.5126 -4.9328 -0.0687 12 6 0.6712 -5.1447 1.1456 13 6 0.3901 -6.6691 1.1047 14 6 1.7239 -7.2601 0.5591 15 1 2.3165 -7.6523 1.3857 16 6 1.3664 -8.3857 -0.3917 17 6 2.4167 -8.6003 -1.4726 18 6 2.5641 -7.2930 -2.2619 19 6 3.1941 -6.2596 -1.3334 20 6 2.4397 -6.0786 -0.0562 21 1 3.1995 -5.8028 0.6751 22 1 -0.4849 0.8401 -0.0004 23 1 0.6242 -2.5523 0.8976 24 1 0.6243 -2.5615 -0.8823 25 1 2.9144 -3.5725 -0.8422 26 1 2.8275 -3.6374 0.9345 27 1 1.2208 -4.8772 2.0480 28 1 -0.2576 -4.5786 1.0756 29 1 0.1813 -7.0490 2.1049 30 1 -0.4366 -6.8903 0.4299 31 1 1.2565 -9.3073 0.1798 32 1 0.4137 -8.1543 -0.8682 33 1 3.3697 -8.8620 -1.0129 34 1 2.0987 -9.4005 -2.1409 35 1 3.2080 -7.4540 -3.1265 36 1 1.5840 -6.9467 -2.5896 37 1 4.2108 -6.5740 -1.0979 38 1 3.2356 -5.3019 -1.8522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132764256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:22 Heat of formation + Delta-G solvation = -19.184462 kcal Electronic energy + Delta-G solvation = -15859.779096 eV Core-core repulsion = 13507.834040 eV Total energy + Delta-G solvation = -2351.945056 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87270 -35.68873 -33.45312 -32.44811 -30.35985 -28.36850 -27.59507 -24.26340 -22.44839 -21.94832 -21.25650 -19.83617 -18.16974 -16.30631 -15.92942 -14.88459 -14.68477 -14.42954 -13.98984 -13.92521 -13.33515 -13.12837 -12.41859 -12.19372 -11.86343 -11.73335 -11.50215 -11.28862 -11.00945 -10.84142 -10.73305 -10.55333 -10.48540 -10.28075 -10.01909 -9.93631 -9.68274 -9.30359 -9.08046 -8.31623 -7.73909 -5.97355 -3.99646 3.33519 3.39424 3.42683 4.38128 4.53386 4.68248 4.80678 4.95208 5.19753 5.29140 5.37831 5.38757 5.53782 5.60465 5.66112 5.73598 5.82068 5.98261 5.99181 6.01438 6.13299 6.20358 6.24635 6.32692 6.37707 6.44371 6.46484 6.55644 6.59146 6.59974 7.02408 7.50048 7.57754 7.79543 7.92523 8.11677 8.46315 9.07581 9.63841 11.14119 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047543 B = 0.006029 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.802464 B = 4643.360312 C = 4974.008060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.054 3.946 11 N -0.507 5.507 12 C 0.035 3.965 13 C -0.122 4.122 14 C -0.081 4.081 15 H 0.066 0.934 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.101 4.101 20 C 0.077 3.923 21 H 0.014 0.986 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.018 0.982 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -16.133 -0.273 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.073 4.073 11 N -0.232 5.232 12 C -0.093 4.093 13 C -0.160 4.160 14 C -0.100 4.100 15 H 0.085 0.915 16 C -0.143 4.143 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.139 4.139 20 C -0.032 4.032 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.975 -15.965 -0.741 16.256 hybrid contribution 1.036 1.089 0.875 1.739 sum 4.011 -14.876 0.134 15.407 Atomic orbital electron populations 1.69976 1.06023 1.26528 1.50757 1.24989 0.94823 0.99145 0.95333 0.86601 0.79799 0.83516 0.78115 1.20623 1.21226 1.19959 1.21200 0.92953 0.91106 1.50762 0.92859 1.19053 0.93929 0.90091 0.97735 1.22517 0.97145 0.89044 0.98585 1.65057 1.19584 1.01585 1.36956 1.23276 0.98941 0.95130 0.91915 1.22985 0.96978 0.95582 1.00438 1.21154 0.96639 0.94686 0.97512 0.91532 1.21172 0.99288 0.97274 0.96613 1.21469 0.99098 0.97527 0.97476 1.21467 1.01511 0.94833 0.97253 1.20630 0.97523 1.00299 0.95447 1.20763 0.94097 0.91975 0.96404 0.96781 0.93025 0.96670 0.95670 0.92004 0.96385 0.94152 0.89667 0.91909 0.90765 0.92761 0.91779 0.92363 0.92306 0.92401 0.91235 0.92697 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 10 C 0.05 1.20 4.55 -3.83 -0.02 1.18 16 11 N -0.51 -9.68 5.21 -226.09 -1.18 -10.86 16 12 C 0.04 0.62 5.63 -1.43 -0.01 0.61 16 13 C -0.12 -1.68 6.54 -24.17 -0.16 -1.84 16 14 C -0.08 -1.08 3.22 -90.74 -0.29 -1.37 16 15 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 16 C -0.11 -1.21 5.25 -27.82 -0.15 -1.35 16 17 C -0.12 -1.27 5.96 -26.91 -0.16 -1.43 16 18 C -0.11 -1.40 6.05 -26.75 -0.16 -1.56 16 19 C -0.10 -1.45 5.45 -28.73 -0.16 -1.61 16 20 C 0.08 1.21 2.08 -70.09 -0.15 1.07 16 21 H 0.01 0.24 7.45 -51.93 -0.39 -0.15 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.42 7.21 -51.93 -0.37 0.05 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.36 6.96 -51.92 -0.36 0.99 16 26 H 0.02 0.40 7.83 -51.93 -0.41 -0.01 16 27 H 0.04 0.72 7.98 -51.93 -0.41 0.30 16 28 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.07 1.01 7.22 -51.93 -0.38 0.63 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.77 7.20 -51.93 -0.37 0.39 16 33 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 LS Contribution 289.09 15.07 4.36 4.36 Total: -1.00 -30.11 289.09 -9.69 -39.79 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.79 Total: -4.22 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.79 Total: -19.45 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.44 Total: -37.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.11 -9.69 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132764256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.610 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds