Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47030 * 2 1 4 4 N 1.40076 * 126.03574 * 269.97461 * 3 2 1 5 5 C 1.30844 * 108.20575 * 180.02562 * 4 3 2 6 6 C 1.39875 * 108.19682 * 359.77768 * 5 4 3 7 7 C 1.34943 * 126.03535 * 90.00040 * 3 2 1 8 8 C 1.50706 * 126.12855 * 359.94579 * 7 3 2 9 9 N 1.46902 * 109.46577 * 274.99705 * 8 7 3 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47172 * 325.00303 * 10 9 8 12 12 C 1.53000 * 109.47191 * 85.00066 * 10 9 8 13 13 C 1.50695 * 109.47374 * 205.00372 * 10 9 8 14 14 H 1.08001 * 119.99954 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99676 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 119.99872 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.46759 * 90.00636 * 17 15 13 19 19 H 1.48503 * 109.46988 * 210.00095 * 17 15 13 20 20 H 1.48490 * 109.47344 * 330.00368 * 17 15 13 21 21 H 1.09000 * 109.47090 * 299.99427 * 1 2 3 22 22 H 1.08999 * 109.47452 * 60.00288 * 1 2 3 23 23 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46842 * 240.00216 * 2 1 3 25 25 H 1.09000 * 109.47298 * 120.00242 * 2 1 3 26 26 H 1.07996 * 125.90184 * 180.02562 * 5 4 3 27 27 H 1.08000 * 126.03420 * 180.23100 * 6 5 4 28 28 H 1.09000 * 109.47318 * 34.99212 * 8 7 3 29 29 H 1.09000 * 109.47161 * 154.99843 * 8 7 3 30 30 H 1.00898 * 110.99915 * 56.05080 * 9 8 7 31 31 H 1.09001 * 109.47129 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.46808 * 300.00221 * 12 10 9 33 33 H 1.08996 * 109.47051 * 59.99755 * 12 10 9 34 34 H 0.97003 * 119.99695 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2934 2.1580 -1.1327 5 6 2.7090 3.3323 -0.7321 6 6 2.7069 3.3425 0.6666 7 6 2.2829 2.1297 1.0912 8 6 2.1280 1.6949 2.5258 9 7 0.7388 1.9063 2.9541 10 6 0.5497 1.4920 4.3508 11 1 1.1758 0.6247 4.5605 12 6 0.9423 2.6413 5.2813 13 6 -0.8965 1.1340 4.5773 14 1 -1.6045 1.2073 3.7650 15 6 -1.3161 0.7139 5.8216 16 7 -2.5783 0.4019 6.0193 17 14 -0.0916 0.5878 7.2267 18 1 -0.0394 1.8808 7.9552 19 1 -0.5160 -0.4882 8.1580 20 1 1.2537 0.2706 6.6840 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.9992 4.1532 -1.3710 27 1 2.9950 4.1713 1.2963 28 1 2.3785 0.6377 2.6142 29 1 2.7960 2.2807 3.1572 30 1 0.0951 1.4248 2.3443 31 1 0.8024 2.3338 6.3177 32 1 1.9884 2.9002 5.1175 33 1 0.3163 3.5086 5.0716 34 1 -2.8734 0.1060 6.8946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134972885.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 79.554182 kcal Electronic energy + Delta-G solvation = -15419.938549 eV Core-core repulsion = 12968.734778 eV Total energy + Delta-G solvation = -2451.203770 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01748 -36.35630 -34.30771 -32.79324 -31.06420 -29.26849 -28.63303 -25.47094 -24.27655 -23.60684 -20.87453 -20.02487 -19.31488 -17.11580 -16.33333 -15.52354 -15.04951 -14.81356 -13.98772 -13.79342 -13.76518 -13.25914 -13.06165 -12.42513 -12.30785 -12.12640 -12.09828 -11.84084 -11.29135 -11.07365 -10.96472 -10.72075 -10.37003 -10.16574 -9.59485 -9.16251 -9.04399 -8.68243 -8.28290 -7.65519 -6.16982 -4.17965 2.08329 2.69296 3.07664 3.21996 3.30597 3.33450 4.31710 4.63969 4.80385 5.07280 5.09215 5.16990 5.19133 5.25644 5.42425 5.67022 5.78393 5.89158 5.98579 6.01037 6.21711 6.30894 6.45097 6.47903 6.62709 6.72044 6.88818 7.22614 7.30580 7.47295 7.78906 7.93738 8.19125 8.50444 8.86157 9.44290 10.95768 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.007300 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.670159 B = 3834.686734 C = 4249.325907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 N -0.367 5.367 4 N -0.306 5.306 5 C 0.040 3.960 6 C -0.264 4.264 7 C 0.101 3.899 8 C 0.116 3.884 9 N -0.670 5.670 10 C 0.182 3.818 11 H 0.002 0.998 12 C -0.138 4.138 13 C -0.523 4.523 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.268 1.268 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.179 0.821 27 H 0.144 0.856 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.338 0.662 31 H 0.038 0.962 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 0.903 -8.813 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 N -0.151 5.151 4 N -0.128 5.128 5 C -0.145 4.145 6 C -0.294 4.294 7 C -0.027 4.027 8 C -0.015 4.015 9 N -0.304 5.304 10 C 0.074 3.926 11 H 0.020 0.980 12 C -0.196 4.196 13 C -0.561 4.561 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.204 1.204 19 H -0.225 1.225 20 H -0.194 1.194 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.196 0.804 27 H 0.162 0.838 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.159 0.841 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.860 0.601 -9.528 13.725 hybrid contribution 0.683 -0.428 1.487 1.691 sum 10.543 0.172 -8.041 13.261 Atomic orbital electron populations 1.22256 0.93799 1.03331 1.03708 1.21666 0.95733 0.78117 1.03930 1.48673 1.51062 1.11947 1.03376 1.77257 1.22506 1.04597 1.08393 1.23749 0.99867 0.95745 0.95128 1.21189 1.15209 0.98277 0.94689 1.21189 0.98733 0.92423 0.90343 1.20598 0.94472 0.98547 0.87876 1.60656 1.01284 1.63160 1.05308 1.19577 0.97304 0.91668 0.84088 0.98002 1.22079 0.98440 1.00817 0.98285 1.21052 0.92103 1.44944 0.98042 0.90397 1.24923 0.95079 0.94471 0.98483 1.69888 1.14955 1.44976 1.23517 0.86797 0.81719 0.77056 0.82252 1.20383 1.22473 1.19364 0.91019 0.91753 0.90424 0.89072 0.89137 0.80444 0.83773 0.94918 0.89021 0.84141 0.94373 0.95396 0.92135 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.13 1.61 6.96 -4.04 -0.03 1.58 16 3 N -0.37 -5.67 3.61 -57.14 -0.21 -5.87 16 4 N -0.31 -4.89 12.58 30.63 0.39 -4.50 16 5 C 0.04 0.57 12.03 -17.36 -0.21 0.36 16 6 C -0.26 -3.95 10.72 -40.01 -0.43 -4.38 16 7 C 0.10 1.61 6.44 -82.26 -0.53 1.08 16 8 C 0.12 1.92 5.65 -4.97 -0.03 1.90 16 9 N -0.67 -13.40 6.29 -109.21 -0.69 -14.08 16 10 C 0.18 4.17 2.19 -68.86 -0.15 4.02 16 11 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 12 C -0.14 -3.00 8.89 37.16 0.33 -2.67 16 13 C -0.52 -14.25 9.17 -34.44 -0.32 -14.57 16 14 H 0.08 2.30 7.86 -52.49 -0.41 1.89 16 15 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 16 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 17 Si 0.89 21.47 24.37 -169.99 -4.14 17.32 16 18 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 19 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 21 H 0.07 1.10 5.79 -51.93 -0.30 0.80 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.07 7.15 -51.93 -0.37 0.69 16 26 H 0.18 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.03 0.52 7.15 -51.93 -0.37 0.15 16 29 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 30 H 0.34 6.83 5.86 -39.29 -0.23 6.60 16 31 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 32 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -30.66 274.89 -5.52 -36.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.70 Total: 5.34 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.08 Total: -12.57 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.27 Total: -50.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.66 -5.52 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134972885.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.730 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds