Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47030 * 2 1 4 4 N 1.40076 * 126.03574 * 269.97461 * 3 2 1 5 5 C 1.30844 * 108.20575 * 180.02562 * 4 3 2 6 6 C 1.39875 * 108.19682 * 359.77768 * 5 4 3 7 7 C 1.34943 * 126.03535 * 90.00040 * 3 2 1 8 8 C 1.50706 * 126.12855 * 359.94579 * 7 3 2 9 9 N 1.46902 * 109.46577 * 274.99705 * 8 7 3 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47172 * 325.00303 * 10 9 8 12 12 C 1.53000 * 109.47191 * 85.00066 * 10 9 8 13 13 C 1.50695 * 109.47374 * 205.00372 * 10 9 8 14 14 H 1.08001 * 119.99954 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99676 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 119.99872 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.46759 * 90.00636 * 17 15 13 19 19 H 1.48503 * 109.46988 * 210.00095 * 17 15 13 20 20 H 1.48490 * 109.47344 * 330.00368 * 17 15 13 21 21 H 1.09000 * 109.47090 * 299.99427 * 1 2 3 22 22 H 1.08999 * 109.47452 * 60.00288 * 1 2 3 23 23 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46842 * 240.00216 * 2 1 3 25 25 H 1.09000 * 109.47298 * 120.00242 * 2 1 3 26 26 H 1.07996 * 125.90184 * 180.02562 * 5 4 3 27 27 H 1.08000 * 126.03420 * 180.23100 * 6 5 4 28 28 H 1.09000 * 109.47318 * 34.99212 * 8 7 3 29 29 H 1.09000 * 109.47161 * 154.99843 * 8 7 3 30 30 H 1.00898 * 110.99915 * 56.05080 * 9 8 7 31 31 H 1.09001 * 109.47129 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.46808 * 300.00221 * 12 10 9 33 33 H 1.08996 * 109.47051 * 59.99755 * 12 10 9 34 34 H 0.97003 * 119.99695 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2934 2.1580 -1.1327 5 6 2.7090 3.3323 -0.7321 6 6 2.7069 3.3425 0.6666 7 6 2.2829 2.1297 1.0912 8 6 2.1280 1.6949 2.5258 9 7 0.7388 1.9063 2.9541 10 6 0.5497 1.4920 4.3508 11 1 1.1758 0.6247 4.5605 12 6 0.9423 2.6413 5.2813 13 6 -0.8965 1.1340 4.5773 14 1 -1.6045 1.2073 3.7650 15 6 -1.3161 0.7139 5.8216 16 7 -2.5783 0.4019 6.0193 17 14 -0.0916 0.5878 7.2267 18 1 -0.0394 1.8808 7.9552 19 1 -0.5160 -0.4882 8.1580 20 1 1.2537 0.2706 6.6840 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.9992 4.1532 -1.3710 27 1 2.9950 4.1713 1.2963 28 1 2.3785 0.6377 2.6142 29 1 2.7960 2.2807 3.1572 30 1 0.0951 1.4248 2.3443 31 1 0.8024 2.3338 6.3177 32 1 1.9884 2.9002 5.1175 33 1 0.3163 3.5086 5.0716 34 1 -2.8734 0.1060 6.8946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134972885.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 57.575633 kcal Electronic energy + Delta-G solvation = -15420.891610 eV Core-core repulsion = 12968.734778 eV Total energy + Delta-G solvation = -2452.156832 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15412 -37.99544 -35.43046 -34.64892 -32.68404 -30.48455 -29.99633 -27.29995 -25.84216 -24.68078 -22.00693 -21.80912 -20.49950 -18.95047 -17.74744 -17.17823 -16.34195 -16.02850 -15.56539 -15.24532 -15.07534 -14.83212 -14.38319 -14.09915 -13.75789 -13.42758 -13.36519 -12.98313 -12.84148 -12.69534 -12.51899 -12.22941 -12.04610 -11.53149 -11.43492 -11.09165 -10.78287 -10.25237 -9.45403 -9.22005 -8.31981 -6.37652 0.90689 1.33093 1.36416 1.47389 1.62451 1.95988 2.30854 3.03535 3.45246 3.64338 3.72241 4.04933 4.10542 4.21028 4.29445 4.49968 4.57299 4.68868 4.72209 4.75559 4.85046 4.90355 4.92443 5.01450 5.13965 5.31594 5.48766 5.62112 5.82500 5.91654 6.12228 6.42957 6.57730 6.74962 6.81512 7.29017 8.84371 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.007300 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.670159 B = 3834.686734 C = 4249.325907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.122 3.878 3 N -0.373 5.373 4 N -0.330 5.330 5 C 0.042 3.958 6 C -0.269 4.269 7 C 0.083 3.917 8 C 0.121 3.879 9 N -0.677 5.677 10 C 0.187 3.813 11 H 0.005 0.995 12 C -0.136 4.136 13 C -0.527 4.527 14 H 0.037 0.963 15 C 0.016 3.984 16 N -0.945 5.945 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.299 1.299 20 H -0.245 1.245 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.099 0.901 26 H 0.212 0.788 27 H 0.160 0.840 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.334 0.666 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 1.291 -8.768 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.157 5.157 4 N -0.151 5.151 5 C -0.143 4.143 6 C -0.299 4.299 7 C -0.045 4.045 8 C -0.010 4.010 9 N -0.310 5.310 10 C 0.078 3.922 11 H 0.023 0.977 12 C -0.194 4.194 13 C -0.565 4.565 14 H 0.055 0.945 15 C -0.182 4.182 16 N -0.585 5.585 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.227 1.227 20 H -0.169 1.169 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.128 0.872 25 H 0.118 0.882 26 H 0.229 0.771 27 H 0.177 0.823 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.313 0.996 -9.506 15.588 hybrid contribution -0.123 -0.527 1.338 1.443 sum 12.190 0.469 -8.168 14.681 Atomic orbital electron populations 1.22194 0.94326 1.04067 1.01862 1.21857 0.95224 0.77470 1.05304 1.48886 1.51072 1.12627 1.03127 1.77227 1.23350 1.05529 1.09030 1.24330 0.98624 0.95981 0.95356 1.21517 1.14655 0.98307 0.95416 1.21209 0.99852 0.93215 0.90181 1.20600 0.92338 0.99435 0.88607 1.60609 1.03378 1.63086 1.03912 1.19421 0.94205 0.92396 0.86197 0.97704 1.22007 1.00460 0.99602 0.97340 1.21345 0.93994 1.44291 0.96897 0.94520 1.25802 0.96831 0.94181 1.01419 1.70041 1.17320 1.46804 1.24353 0.85785 0.80165 0.77321 0.78719 1.19287 1.22687 1.16870 0.93857 0.92374 0.88463 0.87195 0.88242 0.77126 0.82278 0.94025 0.87695 0.84675 0.94906 0.91877 0.93157 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 10.24 71.98 0.74 -3.52 16 2 C 0.12 2.94 6.96 86.38 0.60 3.55 16 3 N -0.37 -11.00 3.61 -334.69 -1.21 -12.20 16 4 N -0.33 -9.96 12.58 -57.02 -0.72 -10.68 16 5 C 0.04 1.09 12.03 85.24 1.03 2.11 16 6 C -0.27 -7.43 10.72 21.99 0.24 -7.20 16 7 C 0.08 2.51 6.44 41.41 0.27 2.78 16 8 C 0.12 3.74 5.65 85.56 0.48 4.22 16 9 N -0.68 -26.42 6.29 -499.44 -3.14 -29.56 16 10 C 0.19 8.31 2.19 44.17 0.10 8.41 16 11 H 0.01 0.24 6.86 -2.38 -0.02 0.22 16 12 C -0.14 -5.55 8.89 71.98 0.64 -4.91 16 13 C -0.53 -29.16 9.17 25.60 0.23 -28.93 16 14 H 0.04 2.27 7.86 -2.91 -0.02 2.25 16 15 C 0.02 0.89 5.45 84.65 0.46 1.35 16 16 N -0.95 -57.86 13.96 21.45 0.30 -57.56 16 17 Si 0.95 43.41 24.37 68.60 1.67 45.09 16 18 H -0.27 -11.66 6.87 99.48 0.68 -10.97 16 19 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.24 -10.15 6.53 99.48 0.65 -9.50 16 21 H 0.04 1.36 5.79 -2.39 -0.01 1.34 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.10 2.19 7.15 -2.39 -0.02 2.18 16 26 H 0.21 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.04 1.22 7.15 -2.39 -0.02 1.21 16 29 H 0.10 2.96 7.44 -2.39 -0.02 2.94 16 30 H 0.33 13.62 5.86 -89.70 -0.53 13.10 16 31 H 0.03 1.36 3.27 -2.39 -0.01 1.35 16 32 H 0.06 2.11 7.45 -2.39 -0.02 2.09 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -66.11 274.89 2.17 -63.94 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.49 Total: 23.12 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.78 Total: -22.14 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.77 Total: -110.01 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.67 Total: 45.09 kcal Total: -66.11 2.17 -63.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134972885.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.515 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds