Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48495 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 300.00090 * 3 2 1 6 6 H 1.48502 * 109.47083 * 59.99869 * 3 2 1 7 7 C 1.37877 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00482 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99826 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47365 * 300.00711 * 9 7 2 11 11 C 1.52999 * 109.46888 * 60.00177 * 9 7 2 12 12 C 1.53000 * 109.46900 * 60.00286 * 11 9 7 13 13 C 1.53000 * 109.47164 * 59.99740 * 12 11 9 14 14 C 1.52999 * 109.47425 * 299.99939 * 13 12 11 15 15 C 1.53000 * 109.47239 * 180.02562 * 9 7 2 16 16 H 1.08998 * 109.46984 * 180.02562 * 15 9 7 17 17 N 1.46905 * 109.47046 * 60.00095 * 15 9 7 18 18 C 1.48560 * 110.99577 * 175.00031 * 17 15 9 19 19 C 1.54378 * 104.69549 * 200.89794 * 18 17 15 20 20 C 1.54571 * 104.91190 * 23.88545 * 19 18 17 21 21 C 1.48555 * 110.99889 * 59.58512 * 17 15 9 22 22 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47477 * 299.99665 * 11 9 7 24 24 H 1.09009 * 109.46932 * 179.97438 * 11 9 7 25 25 H 1.09000 * 109.47063 * 299.99449 * 12 11 9 26 26 H 1.09001 * 109.47207 * 179.97438 * 12 11 9 27 27 H 1.09004 * 109.47330 * 179.97438 * 13 12 11 28 28 H 1.08998 * 109.46984 * 60.00264 * 13 12 11 29 29 H 1.09000 * 109.46813 * 300.00298 * 14 13 12 30 30 H 1.08994 * 109.47339 * 179.97438 * 14 13 12 31 31 H 1.09002 * 110.41441 * 319.73871 * 18 17 15 32 32 H 1.09002 * 110.41248 * 82.06172 * 18 17 15 33 33 H 1.09006 * 110.32557 * 142.80924 * 19 18 17 34 34 H 1.08996 * 110.32821 * 265.02105 * 19 18 17 35 35 H 1.08995 * 110.29758 * 241.08109 * 20 19 18 36 36 H 1.09004 * 110.32005 * 118.89089 * 20 19 18 37 37 H 1.09005 * 110.41154 * 277.81401 * 21 17 15 38 38 H 1.08998 * 110.41848 * 40.13562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 1.2503 -2.4986 -2.4990 13 6 2.2445 -3.6615 -2.4995 14 6 3.1246 -3.5808 -1.2505 15 6 2.2453 -3.6621 -0.0005 16 1 1.7003 -4.6060 -0.0010 17 7 3.0899 -3.5842 1.1990 18 6 3.9878 -4.7638 1.2952 19 6 4.3881 -4.8308 2.7846 20 6 3.2535 -4.0967 3.5349 21 6 2.2674 -3.6499 2.4343 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3373 -1.7515 -1.2491 24 1 -0.1737 -3.5241 -1.2497 25 1 1.7952 -1.5546 -2.4990 26 1 0.6234 -2.5566 -3.3888 27 1 2.8706 -3.6039 -3.3899 28 1 1.6995 -4.6055 -2.4996 29 1 3.6695 -2.6368 -1.2506 30 1 3.8325 -4.4095 -1.2507 31 1 3.4575 -5.6702 1.0028 32 1 4.8698 -4.6222 0.6705 33 1 4.4522 -5.8682 3.1132 34 1 5.3392 -4.3229 2.9443 35 1 3.6491 -3.2295 4.0635 36 1 2.7607 -4.7741 4.2324 37 1 1.8550 -2.6686 2.6691 38 1 1.4665 -4.3803 2.3195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136681582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -14.991010 kcal Electronic energy + Delta-G solvation = -16603.995872 eV Core-core repulsion = 14252.232658 eV Total energy + Delta-G solvation = -2351.763214 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.92940 -36.50984 -32.46622 -31.45360 -29.46367 -28.07983 -27.43576 -24.58080 -21.84095 -21.50451 -19.84834 -19.73891 -18.59150 -15.70841 -15.37618 -15.36985 -14.51086 -13.85204 -13.46398 -13.25994 -12.95401 -12.61329 -12.16762 -12.01624 -11.54362 -11.16453 -11.05476 -10.87211 -10.82977 -10.64220 -10.46957 -10.42793 -10.15523 -10.06834 -9.96016 -9.55183 -9.12380 -8.78697 -8.55050 -8.11594 -7.56733 -5.82656 -3.82421 3.38450 3.47020 3.52558 4.57444 4.71002 5.14098 5.19498 5.36443 5.50064 5.74282 5.77961 5.79150 5.91668 6.03449 6.13308 6.16416 6.18957 6.25155 6.40138 6.45380 6.53911 6.56919 6.63389 6.66551 6.78131 6.82212 6.88948 7.13406 7.20284 7.49477 7.56251 7.69029 7.86228 7.89894 8.07923 8.30447 8.66737 9.20967 9.78534 11.24212 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.011794 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.127027 B = 2373.590486 C = 3017.122337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.471 4.471 8 H 0.064 0.936 9 C 0.054 3.946 10 H 0.024 0.976 11 C -0.110 4.110 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.098 4.098 15 C 0.088 3.912 16 H 0.011 0.989 17 N -0.485 5.485 18 C 0.028 3.972 19 C -0.122 4.122 20 C -0.125 4.125 21 C 0.041 3.959 22 H 0.255 0.745 23 H 0.093 0.907 24 H 0.010 0.990 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 -8.259 1.445 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.035 3.965 10 H 0.042 0.958 11 C -0.148 4.148 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.136 4.136 15 C -0.020 4.020 16 H 0.029 0.971 17 N -0.208 5.208 18 C -0.101 4.101 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.087 4.087 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.028 0.972 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.147 -7.626 1.399 9.306 hybrid contribution -0.092 0.125 0.002 0.155 sum 5.055 -7.501 1.402 9.153 Atomic orbital electron populations 1.69881 1.05771 1.25727 1.52661 1.24936 0.94698 0.98687 0.96200 0.86672 0.80388 0.84588 0.77177 1.19839 1.21531 1.21503 1.21125 0.93188 0.89444 1.47170 0.91795 1.18742 0.91735 0.91974 0.94043 0.95842 1.21542 0.98838 0.99250 0.95179 1.21386 0.97081 0.98432 0.97197 1.21462 0.97861 0.98650 0.96844 1.21436 0.97126 1.01327 0.93699 1.21936 0.93707 0.97680 0.88722 0.97120 1.65382 1.17574 1.36125 1.01729 1.23109 0.98012 0.92935 0.96014 1.22317 0.98994 0.99408 0.95313 1.22359 0.96481 0.99720 0.97710 1.22978 0.94399 1.01399 0.89884 0.93537 0.88876 0.97160 0.91006 0.95101 0.93644 0.93917 0.90319 0.94765 0.95145 0.90959 0.92352 0.91558 0.91376 0.92322 0.89205 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.32 55.43 0.63 -24.90 16 2 C 0.05 1.46 5.30 -17.82 -0.09 1.37 16 3 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.47 -12.44 6.24 -34.44 -0.21 -12.66 16 8 H 0.06 1.75 6.63 -52.49 -0.35 1.40 16 9 C 0.05 1.31 1.82 -91.77 -0.17 1.14 16 10 H 0.02 0.63 6.93 -51.93 -0.36 0.27 16 11 C -0.11 -2.59 5.24 -26.73 -0.14 -2.73 16 12 C -0.10 -2.20 5.70 -26.73 -0.15 -2.35 16 13 C -0.11 -2.05 5.92 -26.73 -0.16 -2.21 16 14 C -0.10 -1.92 4.95 -26.71 -0.13 -2.05 16 15 C 0.09 1.84 1.37 -67.69 -0.09 1.75 16 16 H 0.01 0.23 7.97 -51.93 -0.41 -0.18 16 17 N -0.48 -9.59 4.72 -222.00 -1.05 -10.64 16 18 C 0.03 0.45 5.54 -2.18 -0.01 0.44 16 19 C -0.12 -1.71 7.02 -25.18 -0.18 -1.89 16 20 C -0.12 -1.86 7.01 -25.18 -0.18 -2.04 16 21 C 0.04 0.77 5.32 -2.19 -0.01 0.76 16 22 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 24 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 25 H 0.07 1.67 7.22 -51.93 -0.37 1.30 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.70 6.62 -51.93 -0.34 1.35 16 30 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 31 H 0.03 0.49 7.90 -51.93 -0.41 0.07 16 32 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.89 7.67 -51.93 -0.40 1.49 16 38 H 0.03 0.56 7.97 -51.93 -0.41 0.15 16 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -27.51 281.54 -9.39 -36.90 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.66 Total: -1.71 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.53 Total: -20.46 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.42 Total: -35.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.51 -9.39 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136681582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds