Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48495 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 300.00090 * 3 2 1 6 6 H 1.48502 * 109.47083 * 59.99869 * 3 2 1 7 7 C 1.37877 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00482 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99826 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47365 * 300.00711 * 9 7 2 11 11 C 1.52999 * 109.46888 * 60.00177 * 9 7 2 12 12 C 1.53000 * 109.46900 * 60.00286 * 11 9 7 13 13 C 1.53000 * 109.47164 * 59.99740 * 12 11 9 14 14 C 1.52999 * 109.47425 * 299.99939 * 13 12 11 15 15 C 1.53000 * 109.47239 * 180.02562 * 9 7 2 16 16 H 1.08998 * 109.46984 * 180.02562 * 15 9 7 17 17 N 1.46905 * 109.47046 * 60.00095 * 15 9 7 18 18 C 1.48560 * 110.99577 * 175.00031 * 17 15 9 19 19 C 1.54378 * 104.69549 * 200.89794 * 18 17 15 20 20 C 1.54571 * 104.91190 * 23.88545 * 19 18 17 21 21 C 1.48555 * 110.99889 * 59.58512 * 17 15 9 22 22 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47477 * 299.99665 * 11 9 7 24 24 H 1.09009 * 109.46932 * 179.97438 * 11 9 7 25 25 H 1.09000 * 109.47063 * 299.99449 * 12 11 9 26 26 H 1.09001 * 109.47207 * 179.97438 * 12 11 9 27 27 H 1.09004 * 109.47330 * 179.97438 * 13 12 11 28 28 H 1.08998 * 109.46984 * 60.00264 * 13 12 11 29 29 H 1.09000 * 109.46813 * 300.00298 * 14 13 12 30 30 H 1.08994 * 109.47339 * 179.97438 * 14 13 12 31 31 H 1.09002 * 110.41441 * 319.73871 * 18 17 15 32 32 H 1.09002 * 110.41248 * 82.06172 * 18 17 15 33 33 H 1.09006 * 110.32557 * 142.80924 * 19 18 17 34 34 H 1.08996 * 110.32821 * 265.02105 * 19 18 17 35 35 H 1.08995 * 110.29758 * 241.08109 * 20 19 18 36 36 H 1.09004 * 110.32005 * 118.89089 * 20 19 18 37 37 H 1.09005 * 110.41154 * 277.81401 * 21 17 15 38 38 H 1.08998 * 110.41848 * 40.13562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 1.2503 -2.4986 -2.4990 13 6 2.2445 -3.6615 -2.4995 14 6 3.1246 -3.5808 -1.2505 15 6 2.2453 -3.6621 -0.0005 16 1 1.7003 -4.6060 -0.0010 17 7 3.0899 -3.5842 1.1990 18 6 3.9878 -4.7638 1.2952 19 6 4.3881 -4.8308 2.7846 20 6 3.2535 -4.0967 3.5349 21 6 2.2674 -3.6499 2.4343 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3373 -1.7515 -1.2491 24 1 -0.1737 -3.5241 -1.2497 25 1 1.7952 -1.5546 -2.4990 26 1 0.6234 -2.5566 -3.3888 27 1 2.8706 -3.6039 -3.3899 28 1 1.6995 -4.6055 -2.4996 29 1 3.6695 -2.6368 -1.2506 30 1 3.8325 -4.4095 -1.2507 31 1 3.4575 -5.6702 1.0028 32 1 4.8698 -4.6222 0.6705 33 1 4.4522 -5.8682 3.1132 34 1 5.3392 -4.3229 2.9443 35 1 3.6491 -3.2295 4.0635 36 1 2.7607 -4.7741 4.2324 37 1 1.8550 -2.6686 2.6691 38 1 1.4665 -4.3803 2.3195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136681582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -30.515109 kcal Electronic energy + Delta-G solvation = -16604.669047 eV Core-core repulsion = 14252.232658 eV Total energy + Delta-G solvation = -2352.436390 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49376 -38.06450 -34.47490 -32.92579 -31.25065 -29.46467 -29.04822 -26.59199 -23.36817 -23.13322 -21.40561 -21.05947 -20.44246 -17.58229 -17.10181 -16.74843 -16.36729 -15.51637 -14.97445 -14.87993 -14.64021 -14.24159 -13.68126 -13.52802 -13.25116 -12.88733 -12.72809 -12.64062 -12.34145 -12.31070 -12.13299 -11.88824 -11.79593 -11.73914 -11.40469 -11.28275 -10.90812 -10.64088 -10.49852 -10.13771 -9.09451 -7.94315 -5.98788 1.40553 1.44290 1.54681 2.52045 3.24460 3.38701 3.87196 3.91552 4.12136 4.23615 4.26060 4.43278 4.46213 4.58823 4.69101 4.80987 4.84029 4.86689 4.95438 4.98074 5.02372 5.05509 5.09107 5.20277 5.22477 5.29392 5.37345 5.42873 5.54059 5.69336 5.78703 5.82961 5.98450 6.13231 6.25854 6.48074 6.65085 7.09079 7.64185 9.11469 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.011794 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.127027 B = 2373.590486 C = 3017.122337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.463 4.463 8 H 0.054 0.946 9 C 0.054 3.946 10 H -0.014 1.014 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.104 4.104 14 C -0.093 4.093 15 C 0.094 3.906 16 H 0.012 0.988 17 N -0.509 5.509 18 C 0.027 3.973 19 C -0.114 4.114 20 C -0.118 4.118 21 C 0.040 3.960 22 H 0.252 0.748 23 H 0.058 0.942 24 H 0.020 0.980 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -9.879 1.176 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.004 0.996 11 C -0.147 4.147 12 C -0.137 4.137 13 C -0.142 4.142 14 C -0.131 4.131 15 C -0.015 4.015 16 H 0.030 0.970 17 N -0.233 5.233 18 C -0.101 4.101 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.088 4.088 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.970 -9.251 1.132 11.638 hybrid contribution -0.688 0.614 0.114 0.929 sum 6.282 -8.638 1.246 10.753 Atomic orbital electron populations 1.70021 1.06892 1.26062 1.53928 1.25567 0.95363 1.01509 0.96529 0.85815 0.79403 0.81351 0.76939 1.19420 1.21262 1.21646 1.21226 0.92646 0.90478 1.45863 0.92787 1.18655 0.92118 0.92912 0.92774 0.99601 1.21437 0.98664 0.98309 0.96300 1.21297 0.97345 0.98567 0.96455 1.21432 0.97433 0.97873 0.97488 1.21384 0.97246 1.01151 0.93271 1.21752 0.93517 0.95778 0.90403 0.97031 1.65306 1.17867 1.38689 1.01394 1.23196 0.97334 0.91602 0.97998 1.22320 0.98544 1.01073 0.93281 1.22333 0.96074 1.00363 0.96839 1.22901 0.95349 0.99320 0.91238 0.93830 0.92309 0.96097 0.93627 0.93346 0.90939 0.92304 0.92658 0.91987 0.94404 0.90238 0.89478 0.90774 0.91525 0.89980 0.93065 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 11.32 21.45 0.24 -54.24 16 2 C 0.01 0.35 5.30 84.66 0.45 0.80 16 3 Si 0.94 45.18 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.46 -25.12 6.24 25.60 0.16 -24.96 16 8 H 0.05 3.00 6.63 -2.91 -0.02 2.98 16 9 C 0.05 2.70 1.82 -11.54 -0.02 2.68 16 10 H -0.01 -0.80 6.93 -2.38 -0.02 -0.82 16 11 C -0.11 -5.21 5.24 30.59 0.16 -5.05 16 12 C -0.10 -4.13 5.70 30.59 0.17 -3.95 16 13 C -0.10 -3.61 5.92 30.59 0.18 -3.43 16 14 C -0.09 -3.45 4.95 30.61 0.15 -3.30 16 15 C 0.09 3.89 1.37 44.93 0.06 3.96 16 16 H 0.01 0.49 7.97 -2.39 -0.02 0.47 16 17 N -0.51 -19.79 4.72 -856.27 -4.04 -23.83 16 18 C 0.03 0.79 5.54 86.45 0.48 1.27 16 19 C -0.11 -2.80 7.02 31.60 0.22 -2.58 16 20 C -0.12 -3.30 7.01 31.60 0.22 -3.08 16 21 C 0.04 1.51 5.32 86.45 0.46 1.97 16 22 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.04 2.12 7.22 -2.39 -0.02 2.10 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.32 6.62 -2.39 -0.02 2.30 16 30 H 0.06 1.97 7.08 -2.39 -0.02 1.95 16 31 H 0.04 1.08 7.90 -2.39 -0.02 1.06 16 32 H 0.08 2.25 7.70 -2.39 -0.02 2.23 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 2.27 7.67 -2.38 -0.02 2.25 16 38 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 Total: -1.00 -60.57 281.54 1.93 -58.64 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.00 Total: 7.91 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 2.70 Total: -35.68 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.80 Total: -78.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -60.57 1.93 -58.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136681582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.123 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds