Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48500 * 109.46888 * 239.99891 * 3 2 1 5 5 H 1.48496 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47355 * 120.00118 * 3 2 1 7 7 C 1.37875 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47452 * 175.00027 * 10 9 7 12 12 C 1.52996 * 109.47452 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46933 * 299.99964 * 12 11 10 14 14 N 1.46906 * 109.46945 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99573 * 155.00126 * 14 13 12 16 16 C 1.53002 * 117.49736 * 223.61804 * 15 14 13 17 17 C 1.52997 * 60.00302 * 252.51620 * 16 15 14 18 18 C 1.53001 * 109.47414 * 60.00103 * 13 12 11 19 19 C 1.52999 * 109.46933 * 294.99991 * 10 9 7 20 20 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47000 * 59.99749 * 9 7 2 22 22 H 1.09003 * 109.46889 * 300.00138 * 9 7 2 23 23 H 1.08999 * 109.46973 * 54.99845 * 10 9 7 24 24 H 1.08999 * 109.47180 * 59.99946 * 11 10 9 25 25 H 1.09007 * 109.47285 * 300.00298 * 11 10 9 26 26 H 1.08999 * 109.47280 * 180.02562 * 12 11 10 27 27 H 1.08999 * 109.46973 * 59.99819 * 12 11 10 28 28 H 1.08999 * 109.47173 * 299.99732 * 13 12 11 29 29 H 1.00896 * 111.00309 * 31.04538 * 14 13 12 30 30 H 1.08992 * 115.55223 * 9.33254 * 15 14 13 31 31 H 1.08999 * 117.49825 * 0.02562 * 16 15 14 32 32 H 1.08996 * 117.49846 * 145.02060 * 16 15 14 33 33 H 1.09000 * 117.49893 * 252.51390 * 17 16 15 34 34 H 1.08995 * 117.52321 * 107.48256 * 17 16 15 35 35 H 1.09008 * 109.46883 * 59.99234 * 18 13 12 36 36 H 1.08996 * 109.47627 * 180.02562 * 18 13 12 37 37 H 1.08999 * 109.47173 * 299.99732 * 19 10 9 38 38 H 1.08999 * 109.47006 * 59.99993 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4846 -4.9834 0.1275 12 6 2.4789 -6.1463 0.1295 13 6 3.2752 -6.1385 -1.1770 14 7 4.2303 -7.2547 -1.1749 15 6 4.5741 -7.6559 -2.5456 16 6 4.6241 -9.1541 -2.8517 17 6 5.9214 -8.3480 -2.7621 18 6 4.0361 -4.8171 -1.3027 19 6 3.0412 -3.6540 -1.3049 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.9289 -3.5547 0.8441 24 1 0.8012 -5.0907 -0.7147 25 1 0.9176 -4.9891 1.0585 26 1 1.9368 -7.0877 0.2186 27 1 3.1620 -6.0387 0.9720 28 1 2.5920 -6.2461 -2.0195 29 1 3.8712 -8.0370 -0.6485 30 1 4.2167 -6.9926 -3.3332 31 1 4.4014 -9.8421 -2.0361 32 1 4.2993 -9.4768 -3.8408 33 1 6.4501 -8.1403 -3.6924 34 1 6.5527 -8.5053 -1.8877 35 1 4.7192 -4.7097 -0.4601 36 1 4.6030 -4.8114 -2.2336 37 1 2.3577 -3.7613 -2.1472 38 1 3.5832 -2.7126 -1.3945 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140383512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = -8.548755 kcal Electronic energy + Delta-G solvation = -15386.481474 eV Core-core repulsion = 13034.997617 eV Total energy + Delta-G solvation = -2351.483857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89307 -37.14266 -33.86355 -32.21544 -30.26698 -29.34245 -25.87223 -22.81867 -22.57687 -22.25283 -20.91203 -20.11463 -18.95762 -16.27706 -16.14984 -15.43312 -14.64705 -14.43061 -14.11386 -13.57632 -13.20864 -12.93285 -12.23560 -12.00651 -11.81208 -11.67114 -11.62843 -11.44204 -11.08150 -10.81491 -10.67577 -10.55039 -10.43957 -10.24662 -10.09203 -9.76713 -9.43989 -8.98272 -8.83205 -8.29181 -8.21671 -5.94283 -3.95472 3.36468 3.40770 3.43428 3.71912 4.03036 4.50450 4.80253 4.85957 5.01438 5.12161 5.25860 5.41030 5.45797 5.50311 5.61967 5.75784 5.80441 5.85680 5.99461 6.02013 6.03975 6.11833 6.15394 6.38328 6.52649 6.56946 6.73022 6.82224 7.09752 7.12621 7.21355 7.27830 7.39671 7.74280 7.90185 8.06627 8.50418 9.11135 9.67875 11.17121 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.005217 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.143600 B = 5365.961635 C = 5713.138837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.081 4.081 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.091 3.909 14 N -0.657 5.657 15 C 0.028 3.972 16 C -0.211 4.211 17 C -0.174 4.174 18 C -0.104 4.104 19 C -0.104 4.104 20 H 0.260 0.740 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.339 0.661 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -15.368 -3.886 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.099 4.099 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.018 4.018 14 N -0.287 5.287 15 C -0.083 4.083 16 C -0.250 4.250 17 C -0.212 4.212 18 C -0.143 4.143 19 C -0.142 4.142 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.158 0.842 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.534 -14.831 -3.794 17.063 hybrid contribution -0.346 0.445 -0.308 0.643 sum 7.188 -14.386 -4.102 16.597 Atomic orbital electron populations 1.69957 1.06036 1.26529 1.51226 1.25017 0.94791 0.99117 0.95568 0.86714 0.79612 0.83423 0.78585 1.20306 1.21399 1.20301 1.21239 0.92956 0.91024 1.49975 0.92660 1.19134 0.93694 0.91245 0.96993 1.21200 0.97776 0.94372 0.96553 1.21600 0.97282 0.94715 1.01351 1.21717 0.98108 0.98551 0.97177 1.21630 0.91627 0.91097 0.97415 1.60303 1.46492 1.10815 1.11075 1.22487 1.00726 0.93221 0.91825 1.23415 1.03490 0.95238 1.02881 1.23087 0.91209 1.03980 1.02939 1.21598 0.98096 0.93309 1.01256 1.21521 0.97272 0.97268 0.98105 0.93083 0.96734 0.96784 0.92544 0.92664 0.92300 0.93155 0.91431 0.93860 0.84175 0.87395 0.88935 0.89027 0.88978 0.88552 0.91825 0.93144 0.93119 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 8 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 9 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.64 2.14 -90.62 -0.19 -1.84 16 11 C -0.11 -1.91 5.20 -26.74 -0.14 -2.05 16 12 C -0.12 -1.66 5.19 -26.73 -0.14 -1.80 16 13 C 0.09 1.27 2.39 -67.71 -0.16 1.11 16 14 N -0.66 -8.08 6.59 -99.73 -0.66 -8.74 16 15 C 0.03 0.32 6.03 -67.71 -0.41 -0.09 16 16 C -0.21 -1.95 10.23 -26.73 -0.27 -2.22 16 17 C -0.17 -1.71 10.46 -26.73 -0.28 -1.99 16 18 C -0.10 -1.65 5.43 -26.70 -0.14 -1.79 16 19 C -0.10 -1.95 5.02 -26.70 -0.13 -2.09 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 26 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.62 7.74 -51.93 -0.40 0.22 16 29 H 0.34 3.73 8.13 -39.29 -0.32 3.41 16 30 H 0.11 1.25 7.77 -51.93 -0.40 0.84 16 31 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.47 6.95 -51.93 -0.36 1.11 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -29.25 300.91 -9.69 -38.94 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.90 Total: 0.34 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.38 Total: -25.43 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.08 Total: -35.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.25 -9.69 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140383512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.389 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds