Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48500 * 109.46888 * 239.99891 * 3 2 1 5 5 H 1.48496 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47355 * 120.00118 * 3 2 1 7 7 C 1.37875 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47452 * 175.00027 * 10 9 7 12 12 C 1.52996 * 109.47452 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46933 * 299.99964 * 12 11 10 14 14 N 1.46906 * 109.46945 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99573 * 155.00126 * 14 13 12 16 16 C 1.53002 * 117.49736 * 223.61804 * 15 14 13 17 17 C 1.52997 * 60.00302 * 252.51620 * 16 15 14 18 18 C 1.53001 * 109.47414 * 60.00103 * 13 12 11 19 19 C 1.52999 * 109.46933 * 294.99991 * 10 9 7 20 20 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47000 * 59.99749 * 9 7 2 22 22 H 1.09003 * 109.46889 * 300.00138 * 9 7 2 23 23 H 1.08999 * 109.46973 * 54.99845 * 10 9 7 24 24 H 1.08999 * 109.47180 * 59.99946 * 11 10 9 25 25 H 1.09007 * 109.47285 * 300.00298 * 11 10 9 26 26 H 1.08999 * 109.47280 * 180.02562 * 12 11 10 27 27 H 1.08999 * 109.46973 * 59.99819 * 12 11 10 28 28 H 1.08999 * 109.47173 * 299.99732 * 13 12 11 29 29 H 1.00896 * 111.00309 * 31.04538 * 14 13 12 30 30 H 1.08992 * 115.55223 * 9.33254 * 15 14 13 31 31 H 1.08999 * 117.49825 * 0.02562 * 16 15 14 32 32 H 1.08996 * 117.49846 * 145.02060 * 16 15 14 33 33 H 1.09000 * 117.49893 * 252.51390 * 17 16 15 34 34 H 1.08995 * 117.52321 * 107.48256 * 17 16 15 35 35 H 1.09008 * 109.46883 * 59.99234 * 18 13 12 36 36 H 1.08996 * 109.47627 * 180.02562 * 18 13 12 37 37 H 1.08999 * 109.47173 * 299.99732 * 19 10 9 38 38 H 1.08999 * 109.47006 * 59.99993 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4846 -4.9834 0.1275 12 6 2.4789 -6.1463 0.1295 13 6 3.2752 -6.1385 -1.1770 14 7 4.2303 -7.2547 -1.1749 15 6 4.5741 -7.6559 -2.5456 16 6 4.6241 -9.1541 -2.8517 17 6 5.9214 -8.3480 -2.7621 18 6 4.0361 -4.8171 -1.3027 19 6 3.0412 -3.6540 -1.3049 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.9289 -3.5547 0.8441 24 1 0.8012 -5.0907 -0.7147 25 1 0.9176 -4.9891 1.0585 26 1 1.9368 -7.0877 0.2186 27 1 3.1620 -6.0387 0.9720 28 1 2.5920 -6.2461 -2.0195 29 1 3.8712 -8.0370 -0.6485 30 1 4.2167 -6.9926 -3.3332 31 1 4.4014 -9.8421 -2.0361 32 1 4.2993 -9.4768 -3.8408 33 1 6.4501 -8.1403 -3.6924 34 1 6.5527 -8.5053 -1.8877 35 1 4.7192 -4.7097 -0.4601 36 1 4.6030 -4.8114 -2.2336 37 1 2.3577 -3.7613 -2.1472 38 1 3.5832 -2.7126 -1.3945 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140383512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = -25.322734 kcal Electronic energy + Delta-G solvation = -15387.208848 eV Core-core repulsion = 13034.997617 eV Total energy + Delta-G solvation = -2352.211231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.10867 -38.20723 -35.52712 -33.95570 -31.63230 -30.90775 -27.64374 -24.63242 -23.71833 -23.13186 -21.93203 -21.52100 -20.46831 -18.40442 -17.15380 -16.56229 -16.39025 -15.79762 -15.20027 -15.02651 -14.82856 -14.23432 -13.77733 -13.56687 -13.45898 -12.99877 -12.84788 -12.72213 -12.53636 -12.34515 -12.18526 -12.08726 -11.89855 -11.60984 -11.40344 -11.20807 -11.13531 -10.74008 -10.63698 -10.49307 -9.14482 -8.16491 -6.25811 1.39839 1.42560 1.50274 2.42559 2.91100 3.12652 3.16735 3.84526 3.90242 4.05256 4.14270 4.19833 4.28370 4.39861 4.48731 4.59948 4.69326 4.70316 4.74878 4.79793 4.82083 5.06956 5.09285 5.15229 5.20572 5.29881 5.31538 5.35743 5.42739 5.46624 5.55764 5.63976 5.85668 5.92350 6.17524 6.31874 6.50059 6.90299 7.42450 8.95264 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.005217 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.143600 B = 5365.961635 C = 5713.138837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.074 4.074 11 C -0.107 4.107 12 C -0.108 4.108 13 C 0.099 3.901 14 N -0.658 5.658 15 C 0.007 3.993 16 C -0.195 4.195 17 C -0.173 4.173 18 C -0.094 4.094 19 C -0.097 4.097 20 H 0.262 0.738 21 H -0.012 1.012 22 H -0.014 1.014 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.348 0.652 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -16.635 -4.194 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.011 4.011 14 N -0.289 5.289 15 C -0.103 4.103 16 C -0.234 4.234 17 C -0.211 4.211 18 C -0.132 4.132 19 C -0.135 4.135 20 H 0.070 0.930 21 H 0.006 0.994 22 H 0.004 0.996 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.169 0.831 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.983 -16.121 -4.103 18.905 hybrid contribution -0.816 0.825 -0.223 1.182 sum 8.167 -15.296 -4.326 17.871 Atomic orbital electron populations 1.70095 1.07759 1.27592 1.52232 1.25941 0.95688 1.03156 0.95087 0.85589 0.78339 0.78545 0.79131 1.19265 1.20944 1.19276 1.21642 0.93372 0.92224 1.49599 0.92268 1.19045 0.94103 0.93190 0.94280 1.21055 0.96760 0.94175 0.97243 1.21511 0.97695 0.94123 1.01193 1.21617 0.97464 0.98154 0.97322 1.21431 0.91561 0.90862 0.97199 1.60210 1.45750 1.10796 1.12122 1.22524 1.02149 0.94632 0.91020 1.23464 1.02327 0.93875 1.03735 1.23138 0.91069 1.03629 1.03267 1.21458 0.97202 0.93059 1.01508 1.21397 0.97458 0.97835 0.96858 0.92954 0.99357 0.99568 0.93155 0.92900 0.92471 0.90427 0.91334 0.94017 0.83116 0.88022 0.88099 0.87955 0.88102 0.88822 0.92242 0.92307 0.93678 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.52 8.41 25.60 0.22 -30.30 16 8 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 9 C 0.03 1.65 4.45 29.85 0.13 1.79 16 10 C -0.07 -3.06 2.14 -10.80 -0.02 -3.09 16 11 C -0.11 -3.62 5.20 30.59 0.16 -3.46 16 12 C -0.11 -2.82 5.19 30.59 0.16 -2.66 16 13 C 0.10 2.57 2.39 44.91 0.11 2.68 16 14 N -0.66 -14.52 6.59 -469.45 -3.09 -17.61 16 15 C 0.01 0.15 6.03 44.92 0.27 0.42 16 16 C -0.20 -3.01 10.23 30.59 0.31 -2.70 16 17 C -0.17 -2.97 10.46 30.60 0.32 -2.65 16 18 C -0.09 -2.87 5.43 30.61 0.17 -2.70 16 19 C -0.10 -3.70 5.02 30.61 0.15 -3.54 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 22 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 23 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.12 7.74 -2.39 -0.02 1.10 16 29 H 0.35 6.57 8.13 -89.70 -0.73 5.84 16 30 H 0.10 2.16 7.77 -2.39 -0.02 2.14 16 31 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 2.06 6.95 -2.39 -0.02 2.04 16 Total: -1.00 -63.39 300.91 1.93 -61.46 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.27 Total: 12.64 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 2.44 Total: -45.85 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.81 Total: -75.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.39 1.93 -61.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140383512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.136 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds