Wall clock time and date at job start Mon Mar 30 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 13 13 C 1.46906 * 110.99961 * 84.99970 * 12 2 1 14 14 C 1.52993 * 109.47228 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47582 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47748 * 180.02562 * 15 14 13 17 17 C 1.34939 * 126.03998 * 124.99773 * 16 15 14 18 18 C 1.35323 * 107.74880 * 179.97438 * 17 16 15 19 19 C 1.39876 * 107.91725 * 359.97438 * 18 17 16 20 20 N 1.30840 * 108.20041 * 359.74432 * 19 18 17 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00338 * 321.04590 * 12 2 1 26 26 H 1.08996 * 109.46971 * 299.99790 * 13 12 2 27 27 H 1.08994 * 109.47376 * 59.99710 * 13 12 2 28 28 H 1.09009 * 109.47286 * 300.00086 * 14 13 12 29 29 H 1.09003 * 109.47627 * 59.99632 * 14 13 12 30 30 H 1.09005 * 109.46588 * 299.99907 * 15 14 13 31 31 H 1.09001 * 109.47422 * 59.99419 * 15 14 13 32 32 H 1.08003 * 126.12706 * 359.97438 * 17 16 15 33 33 H 1.07991 * 126.03983 * 180.02562 * 18 17 16 34 34 H 1.07996 * 125.89740 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4206 -4.7691 16 7 3.1535 -0.3028 -5.9445 17 6 2.5347 -0.3875 -7.1406 18 6 3.3104 -1.1411 -7.9540 19 6 4.4424 -1.5298 -7.2301 20 7 4.3523 -1.0230 -6.0273 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 1.4497 -1.4978 -1.4101 26 1 1.0871 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1183 28 1 3.5917 -0.9261 -3.3683 29 1 1.9202 -1.3565 -3.8031 30 1 1.6668 0.8143 -4.9752 31 1 3.3384 1.2442 -4.5400 32 1 1.5895 0.0651 -7.4020 33 1 3.0941 -1.3965 -8.9807 34 1 5.2529 -2.1395 -7.6014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157064037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:02 Heat of formation + Delta-G solvation = 79.809611 kcal Electronic energy + Delta-G solvation = -14637.335710 eV Core-core repulsion = 12186.143016 eV Total energy + Delta-G solvation = -2451.192694 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14977 -36.87269 -34.62386 -32.45601 -30.96958 -30.03531 -28.28674 -25.21863 -24.58303 -21.71109 -21.08374 -20.60099 -20.09240 -17.31150 -16.63013 -15.72766 -15.07671 -14.78590 -14.59642 -13.84211 -13.75840 -13.54006 -12.92525 -12.68471 -12.49278 -12.30720 -11.99398 -11.58295 -11.48173 -11.02401 -10.76817 -10.53100 -10.43321 -10.14016 -9.55755 -9.45102 -9.17213 -8.66234 -8.57245 -7.46475 -6.04584 -4.02169 1.85274 2.46784 2.78706 3.24146 3.33416 3.37180 4.37310 4.39525 4.70372 4.79657 4.97416 5.13958 5.25272 5.28635 5.49500 5.51396 5.63946 5.68458 5.86179 5.90996 6.15664 6.19242 6.30211 6.39320 6.48193 6.58987 6.72196 6.95174 7.08717 7.66283 7.69536 7.89029 8.28781 8.69104 9.07123 9.57685 11.09061 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.066363 B = 0.004529 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.818036 B = 6180.684835 C = 6413.982190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.182 3.818 3 H 0.034 0.966 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.671 5.671 13 C 0.061 3.939 14 C -0.127 4.127 15 C 0.133 3.867 16 N -0.366 5.366 17 C 0.050 3.950 18 C -0.281 4.281 19 C 0.037 3.963 20 N -0.289 5.289 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.025 0.975 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 2.996 -20.676 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.301 5.301 13 C -0.070 4.070 14 C -0.166 4.166 15 C 0.011 3.989 16 N -0.149 5.149 17 C -0.097 4.097 18 C -0.311 4.311 19 C -0.149 4.149 20 N -0.110 5.110 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.671 3.278 -19.025 19.317 hybrid contribution -2.134 0.854 -0.825 2.442 sum -2.805 4.132 -19.851 20.469 Atomic orbital electron populations 1.22860 1.01524 1.00899 0.98829 1.19653 0.88528 0.95114 0.89354 0.94837 1.20993 1.31214 1.13805 0.87756 0.90022 1.24949 0.96011 0.96627 0.95870 1.69887 1.45913 1.40322 0.97835 0.86881 0.80551 0.83928 0.76869 1.20799 1.22383 1.19550 1.60570 1.58074 1.08753 1.02681 1.21852 0.98319 0.96191 0.90631 1.21839 1.04119 0.97925 0.92675 1.21801 0.99662 0.94398 0.83003 1.48863 1.15747 1.39959 1.10284 1.22583 0.99616 1.01111 0.86398 1.21489 0.98112 1.09414 1.02053 1.23898 0.99267 1.00212 0.91492 1.77424 1.01141 1.12051 1.20417 0.92712 0.93612 0.95578 0.92677 0.85178 0.96274 0.91260 0.89458 0.91843 0.88847 0.89545 0.81191 0.83809 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 8.64 37.16 0.32 -3.55 16 2 C 0.18 4.28 2.17 -68.86 -0.15 4.13 16 3 H 0.03 0.82 6.86 -51.93 -0.36 0.46 16 4 C -0.50 -14.21 9.42 -34.45 -0.32 -14.54 16 5 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 9 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.67 -13.53 6.23 -107.95 -0.67 -14.21 16 13 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 14 C -0.13 -1.72 5.67 -26.74 -0.15 -1.87 16 15 C 0.13 1.45 6.51 -4.04 -0.03 1.42 16 16 N -0.37 -4.51 3.68 -61.37 -0.23 -4.73 16 17 C 0.05 0.50 11.45 -17.22 -0.20 0.30 16 18 C -0.28 -2.80 10.80 -40.01 -0.43 -3.23 16 19 C 0.04 0.42 12.03 -17.36 -0.21 0.22 16 20 N -0.29 -4.10 12.42 30.63 0.38 -3.72 16 21 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 22 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 23 H 0.03 0.47 7.45 -51.93 -0.39 0.08 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.33 6.30 8.47 -39.30 -0.33 5.97 16 26 H 0.02 0.28 7.44 -51.93 -0.39 -0.11 16 27 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 28 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -32.69 281.49 -5.96 -38.66 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.03 Total: 3.39 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.29 Total: -14.35 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.26 Total: -49.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.69 -5.96 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157064037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.465 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds