Wall clock time and date at job start Mon Mar 30 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 13 13 C 1.46906 * 110.99961 * 84.99970 * 12 2 1 14 14 C 1.52993 * 109.47228 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47582 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47748 * 180.02562 * 15 14 13 17 17 C 1.34939 * 126.03998 * 124.99773 * 16 15 14 18 18 C 1.35323 * 107.74880 * 179.97438 * 17 16 15 19 19 C 1.39876 * 107.91725 * 359.97438 * 18 17 16 20 20 N 1.30840 * 108.20041 * 359.74432 * 19 18 17 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00338 * 321.04590 * 12 2 1 26 26 H 1.08996 * 109.46971 * 299.99790 * 13 12 2 27 27 H 1.08994 * 109.47376 * 59.99710 * 13 12 2 28 28 H 1.09009 * 109.47286 * 300.00086 * 14 13 12 29 29 H 1.09003 * 109.47627 * 59.99632 * 14 13 12 30 30 H 1.09005 * 109.46588 * 299.99907 * 15 14 13 31 31 H 1.09001 * 109.47422 * 59.99419 * 15 14 13 32 32 H 1.08003 * 126.12706 * 359.97438 * 17 16 15 33 33 H 1.07991 * 126.03983 * 180.02562 * 18 17 16 34 34 H 1.07996 * 125.89740 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4206 -4.7691 16 7 3.1535 -0.3028 -5.9445 17 6 2.5347 -0.3875 -7.1406 18 6 3.3104 -1.1411 -7.9540 19 6 4.4424 -1.5298 -7.2301 20 7 4.3523 -1.0230 -6.0273 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 1.4497 -1.4978 -1.4101 26 1 1.0871 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1183 28 1 3.5917 -0.9261 -3.3683 29 1 1.9202 -1.3565 -3.8031 30 1 1.6668 0.8143 -4.9752 31 1 3.3384 1.2442 -4.5400 32 1 1.5895 0.0651 -7.4020 33 1 3.0941 -1.3965 -8.9807 34 1 5.2529 -2.1395 -7.6014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157064037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:02 Heat of formation + Delta-G solvation = 55.434808 kcal Electronic energy + Delta-G solvation = -14638.392681 eV Core-core repulsion = 12186.143016 eV Total energy + Delta-G solvation = -2452.249665 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95161 -38.39208 -35.89733 -34.29498 -32.35849 -30.94122 -29.60244 -27.14723 -25.80710 -22.85628 -22.16060 -21.85605 -21.28601 -18.80112 -18.04676 -16.96922 -16.73028 -16.06753 -15.78628 -15.14597 -14.97904 -14.62940 -14.47870 -14.07546 -13.78166 -13.58775 -13.36172 -13.05289 -12.77296 -12.59918 -12.21503 -11.99505 -11.87110 -11.48230 -11.41887 -11.19277 -10.75535 -10.35050 -9.45936 -9.03241 -8.27412 -6.30826 1.06228 1.29789 1.35824 1.46458 1.69053 2.01342 2.32372 3.06631 3.33840 3.76930 3.96129 4.10428 4.22364 4.28541 4.41371 4.45432 4.47335 4.59629 4.67420 4.72190 4.78078 4.93398 4.97281 5.11245 5.19777 5.28375 5.39172 5.66393 5.80839 6.02130 6.22465 6.68934 6.73282 6.77516 6.84772 7.34544 8.90418 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.066363 B = 0.004529 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.818036 B = 6180.684835 C = 6413.982190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.187 3.813 3 H 0.031 0.969 4 C -0.509 4.509 5 H 0.030 0.970 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.246 1.246 12 N -0.693 5.693 13 C 0.065 3.935 14 C -0.112 4.112 15 C 0.136 3.864 16 N -0.380 5.380 17 C 0.052 3.948 18 C -0.289 4.289 19 C 0.030 3.970 20 N -0.346 5.346 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.265 0.735 25 H 0.336 0.664 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.209 0.791 33 H 0.169 0.831 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 4.910 -23.124 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.077 3.923 3 H 0.049 0.951 4 C -0.548 4.548 5 H 0.048 0.952 6 C -0.191 4.191 7 N -0.595 5.595 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.227 1.227 11 H -0.170 1.170 12 N -0.323 5.323 13 C -0.065 4.065 14 C -0.151 4.151 15 C 0.015 3.985 16 N -0.163 5.163 17 C -0.094 4.094 18 C -0.319 4.319 19 C -0.156 4.156 20 N -0.168 5.168 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.105 0.895 32 H 0.226 0.774 33 H 0.187 0.813 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.902 5.185 -21.520 22.325 hybrid contribution -1.342 0.141 -0.147 1.358 sum -4.244 5.327 -21.668 22.713 Atomic orbital electron populations 1.22706 0.99102 1.01428 1.00229 1.19417 0.90254 0.94116 0.88495 0.95099 1.21331 1.30378 1.12556 0.90542 0.95179 1.25895 0.97662 1.00344 0.95246 1.70066 1.48072 1.42729 0.98593 0.85728 0.78879 0.79603 0.77335 1.19124 1.22749 1.17011 1.60379 1.58492 1.09865 1.03559 1.21876 0.99752 0.95355 0.89536 1.21616 1.01935 0.98337 0.93197 1.21827 1.01670 0.93285 0.81751 1.48965 1.15636 1.40384 1.11284 1.23281 1.00543 1.00251 0.85290 1.21889 0.97516 1.09216 1.03234 1.24411 1.00360 0.99724 0.91060 1.77368 1.03081 1.14194 1.22204 0.92796 0.94536 0.91590 0.92591 0.84650 0.93527 0.91720 0.92782 0.91895 0.85124 0.89526 0.77398 0.81342 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.91 8.64 71.98 0.62 -6.29 16 2 C 0.19 8.55 2.17 44.17 0.10 8.64 16 3 H 0.03 1.44 6.86 -2.39 -0.02 1.42 16 4 C -0.51 -29.75 9.42 25.60 0.24 -29.51 16 5 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 6 C 0.00 0.29 5.45 84.65 0.46 0.75 16 7 N -0.95 -60.85 13.96 21.44 0.30 -60.55 16 8 Si 0.96 44.67 24.37 68.60 1.67 46.34 16 9 H -0.27 -11.65 6.87 99.48 0.68 -10.96 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.25 -10.45 6.53 99.48 0.65 -9.80 16 12 N -0.69 -27.47 6.23 -495.46 -3.09 -30.56 16 13 C 0.06 1.89 5.48 86.30 0.47 2.36 16 14 C -0.11 -2.90 5.67 30.59 0.17 -2.73 16 15 C 0.14 2.62 6.51 86.38 0.56 3.18 16 16 N -0.38 -8.63 3.68 -348.06 -1.28 -9.91 16 17 C 0.05 0.88 11.45 83.54 0.96 1.84 16 18 C -0.29 -5.05 10.80 21.99 0.24 -4.81 16 19 C 0.03 0.65 12.03 85.24 1.03 1.67 16 20 N -0.35 -9.71 12.42 -57.02 -0.71 -10.42 16 21 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 22 H 0.04 1.50 3.27 -2.39 -0.01 1.49 16 23 H 0.07 2.07 7.45 -2.39 -0.02 2.05 16 24 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 25 H 0.34 12.58 8.47 -89.70 -0.76 11.82 16 26 H 0.05 1.14 7.44 -2.39 -0.02 1.13 16 27 H 0.06 1.96 8.05 -2.39 -0.02 1.94 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.13 1.54 8.07 -2.38 -0.02 1.52 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.17 1.95 8.06 -2.92 -0.02 1.93 16 34 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -73.98 281.49 1.98 -72.00 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.24 Total: 17.99 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.85 Total: -24.89 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.78 Total: -111.45 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal Total: -73.98 1.98 -72.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157064037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.435 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds