Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47244 * 180.02562 * 15 14 13 17 17 C 1.34951 * 126.04037 * 125.00596 * 16 15 14 18 18 C 1.35317 * 107.74641 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.92179 * 359.97438 * 18 17 16 20 20 N 1.30843 * 108.20021 * 359.74166 * 19 18 17 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 27 27 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 28 28 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 29 29 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 30 30 H 1.09002 * 109.47487 * 300.00403 * 15 14 13 31 31 H 1.09001 * 109.46695 * 60.00322 * 15 14 13 32 32 H 1.08001 * 126.12056 * 359.94934 * 17 16 15 33 33 H 1.07999 * 126.03877 * 179.97438 * 18 17 16 34 34 H 1.07999 * 125.89946 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 7 3.1523 -0.3031 5.9448 17 6 4.2125 0.0433 6.7044 18 6 4.3340 -0.8783 7.6878 19 6 3.3128 -1.8199 7.5238 20 7 2.6002 -1.4729 6.4827 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9183 -1.3563 3.8031 29 1 3.5904 -0.9270 3.3692 30 1 3.3378 1.2435 4.5407 31 1 1.6657 0.8146 4.9749 32 1 4.8499 0.9021 6.5541 33 1 5.0866 -0.8855 8.4624 34 1 3.1398 -2.6822 8.1507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157064175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 69.313419 kcal Electronic energy + Delta-G solvation = -14577.418185 eV Core-core repulsion = 12125.770341 eV Total energy + Delta-G solvation = -2451.647843 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10522 -36.54993 -34.45900 -32.49779 -30.62147 -29.84746 -27.78525 -25.34249 -24.43025 -21.61868 -21.04156 -20.42875 -19.74589 -17.21326 -16.45316 -15.63738 -15.06025 -14.53440 -14.45056 -13.79109 -13.52807 -13.44613 -12.90951 -12.67928 -12.14253 -11.87919 -11.67045 -11.13912 -10.96272 -10.76704 -10.66998 -10.54605 -10.22240 -10.12008 -9.94819 -9.43102 -8.85043 -8.61522 -8.49457 -7.30671 -6.04658 -4.11162 1.89744 2.52016 2.82248 3.28179 3.34988 3.39303 4.37316 4.46909 4.76490 4.92123 5.04105 5.23310 5.27194 5.39457 5.61113 5.62929 5.73430 5.82925 5.94529 6.03608 6.38408 6.50202 6.63310 6.86634 7.00054 7.12330 7.21551 7.48359 7.70301 7.76327 7.87500 8.25444 8.36130 8.64555 8.99219 9.54927 11.01738 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061399 B = 0.004280 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.927244 B = 6540.686017 C = 6693.407031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.688 5.688 13 C 0.064 3.936 14 C -0.126 4.126 15 C 0.132 3.868 16 N -0.365 5.365 17 C 0.051 3.949 18 C -0.282 4.282 19 C 0.036 3.964 20 N -0.290 5.290 21 H 0.004 0.996 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 0.407 16.250 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.319 5.319 13 C -0.067 4.067 14 C -0.165 4.165 15 C 0.011 3.989 16 N -0.147 5.147 17 C -0.096 4.096 18 C -0.312 4.312 19 C -0.150 4.150 20 N -0.112 5.112 21 H 0.023 0.977 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.023 0.081 15.388 15.905 hybrid contribution 1.838 0.401 -0.549 1.960 sum 5.861 0.481 14.839 15.962 Atomic orbital electron populations 1.21716 0.97836 0.99406 0.99331 1.19119 0.92688 0.92282 0.85566 0.98173 1.21270 1.31493 1.12554 0.90474 0.92210 1.24927 0.95004 0.95015 0.99076 1.69899 1.36568 1.22954 1.23490 0.86511 0.78454 0.80103 0.82423 1.20756 1.19809 1.21160 1.60695 1.32107 1.33083 1.06042 1.21802 0.99766 0.94064 0.91048 1.21850 1.02607 0.99028 0.92988 1.21827 1.00999 0.93889 0.82190 1.48889 1.22486 1.20212 1.23157 1.22596 0.92472 1.00968 0.93599 1.21480 1.05630 0.99183 1.04868 1.23883 0.94628 1.00207 0.96238 1.77405 1.22089 0.99334 1.12347 0.97727 0.90083 0.94926 0.92907 0.85260 0.96247 0.91575 0.89799 0.91924 0.88749 0.89601 0.81156 0.83834 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.38 2.60 -68.87 -0.18 5.21 16 3 H 0.00 0.02 7.80 -51.92 -0.40 -0.39 16 4 C -0.52 -14.36 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.69 -14.80 6.30 -107.95 -0.68 -15.49 16 13 C 0.06 1.11 5.48 -3.82 -0.02 1.09 16 14 C -0.13 -1.84 5.67 -26.73 -0.15 -1.99 16 15 C 0.13 1.56 6.51 -4.05 -0.03 1.53 16 16 N -0.37 -4.72 3.68 -61.37 -0.23 -4.94 16 17 C 0.05 0.53 11.45 -17.22 -0.20 0.34 16 18 C -0.28 -2.93 10.80 -40.01 -0.43 -3.36 16 19 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 20 N -0.29 -4.23 12.42 30.63 0.38 -3.85 16 21 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 22 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.33 6.95 8.22 -39.29 -0.32 6.63 16 26 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 27 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -30.95 287.98 -6.99 -37.94 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.15 Total: 3.39 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.27 Total: -12.81 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.10 Total: -49.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.95 -6.99 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157064175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.255 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds