Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47244 * 180.02562 * 15 14 13 17 17 C 1.34951 * 126.04037 * 125.00596 * 16 15 14 18 18 C 1.35317 * 107.74641 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.92179 * 359.97438 * 18 17 16 20 20 N 1.30843 * 108.20021 * 359.74166 * 19 18 17 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 27 27 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 28 28 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 29 29 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 30 30 H 1.09002 * 109.47487 * 300.00403 * 15 14 13 31 31 H 1.09001 * 109.46695 * 60.00322 * 15 14 13 32 32 H 1.08001 * 126.12056 * 359.94934 * 17 16 15 33 33 H 1.07999 * 126.03877 * 179.97438 * 18 17 16 34 34 H 1.07999 * 125.89946 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 7 3.1523 -0.3031 5.9448 17 6 4.2125 0.0433 6.7044 18 6 4.3340 -0.8783 7.6878 19 6 3.3128 -1.8199 7.5238 20 7 2.6002 -1.4729 6.4827 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9183 -1.3563 3.8031 29 1 3.5904 -0.9270 3.3692 30 1 3.3378 1.2435 4.5407 31 1 1.6657 0.8146 4.9749 32 1 4.8499 0.9021 6.5541 33 1 5.0866 -0.8855 8.4624 34 1 3.1398 -2.6822 8.1507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157064175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 48.702499 kcal Electronic energy + Delta-G solvation = -14578.311941 eV Core-core repulsion = 12125.770341 eV Total energy + Delta-G solvation = -2452.541600 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.95454 -38.17497 -35.89121 -34.20720 -31.97100 -30.85852 -29.34601 -27.36605 -25.76194 -22.89141 -21.94185 -21.72350 -21.28993 -18.55371 -18.01587 -16.99231 -16.67754 -15.97885 -15.61907 -15.13747 -14.96247 -14.64635 -14.33005 -13.64649 -13.60935 -13.33147 -13.17945 -12.84794 -12.71410 -12.50166 -12.24016 -12.22173 -11.91277 -11.73567 -11.44983 -10.91388 -10.58779 -10.35392 -9.46373 -9.08083 -8.15272 -6.29567 1.05738 1.41079 1.42761 1.53381 1.67408 2.01427 2.40507 3.13270 3.41220 3.79604 3.96040 4.09918 4.23442 4.29147 4.45833 4.48261 4.65622 4.77136 4.82538 4.93691 5.06013 5.09985 5.18730 5.20031 5.23710 5.46771 5.65361 5.81505 5.83897 6.20014 6.20823 6.44776 6.75844 6.84491 6.97175 7.41010 8.90486 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061399 B = 0.004280 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.927244 B = 6540.686017 C = 6693.407031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.025 1.025 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.270 1.270 11 H -0.282 1.282 12 N -0.693 5.693 13 C 0.067 3.933 14 C -0.108 4.108 15 C 0.136 3.864 16 N -0.380 5.380 17 C 0.050 3.950 18 C -0.288 4.288 19 C 0.031 3.969 20 N -0.344 5.344 21 H 0.023 0.977 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.263 0.737 25 H 0.332 0.668 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.170 0.830 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 0.509 17.062 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.008 1.008 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.194 1.194 11 H -0.208 1.208 12 N -0.324 5.324 13 C -0.063 4.063 14 C -0.147 4.147 15 C 0.015 3.985 16 N -0.163 5.163 17 C -0.096 4.096 18 C -0.317 4.317 19 C -0.154 4.154 20 N -0.166 5.166 21 H 0.042 0.958 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.223 0.777 33 H 0.187 0.813 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.345 0.177 16.228 17.086 hybrid contribution 1.452 0.376 -0.713 1.661 sum 6.797 0.553 15.515 16.947 Atomic orbital electron populations 1.21556 0.97823 0.98748 0.99145 1.18933 0.92711 0.90960 0.86801 1.00792 1.21599 1.31835 1.12773 0.91730 0.92406 1.25737 0.95097 0.95689 1.02045 1.70018 1.37304 1.24063 1.24250 0.85477 0.78081 0.78973 0.78610 1.19910 1.19427 1.20773 1.60601 1.32338 1.33745 1.05675 1.21823 1.00074 0.93904 0.90520 1.21591 1.01481 0.98605 0.92978 1.21795 1.02232 0.93577 0.80908 1.48949 1.23367 1.20274 1.23685 1.23274 0.91710 1.01779 0.92813 1.21885 1.05744 0.98600 1.05494 1.24430 0.94444 1.00965 0.95594 1.77350 1.24139 1.01003 1.14128 0.95802 0.92328 0.95638 0.92754 0.85070 0.95395 0.91829 0.92122 0.92154 0.85707 0.89429 0.77670 0.81273 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.19 71.98 0.66 -5.16 16 2 C 0.21 11.05 2.60 44.17 0.11 11.17 16 3 H -0.03 -1.42 7.80 -2.38 -0.02 -1.44 16 4 C -0.54 -30.07 8.59 25.60 0.22 -29.85 16 5 H 0.06 3.16 7.62 -2.91 -0.02 3.13 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.69 -29.79 6.30 -495.44 -3.12 -32.92 16 13 C 0.07 2.27 5.48 86.30 0.47 2.75 16 14 C -0.11 -3.06 5.67 30.59 0.17 -2.89 16 15 C 0.14 2.98 6.51 86.38 0.56 3.54 16 16 N -0.38 -9.21 3.68 -348.07 -1.28 -10.49 16 17 C 0.05 0.92 11.45 83.54 0.96 1.88 16 18 C -0.29 -5.27 10.80 21.99 0.24 -5.03 16 19 C 0.03 0.68 12.03 85.24 1.03 1.71 16 20 N -0.34 -9.81 12.42 -57.02 -0.71 -10.52 16 21 H 0.02 1.07 7.45 -2.39 -0.02 1.05 16 22 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 23 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.33 13.97 8.22 -89.70 -0.74 13.23 16 26 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 27 H 0.06 2.19 7.44 -2.39 -0.02 2.17 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.12 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -66.51 287.98 2.37 -64.14 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.34 Total: 17.53 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.87 Total: -20.67 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.87 Total: -106.58 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -66.51 2.37 -64.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157064175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.843 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds