Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00334 * 2 1 4 4 H 1.48503 * 109.47332 * 270.00266 * 3 2 1 5 5 H 1.48503 * 109.46974 * 29.99536 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.99802 * 3 2 1 7 7 C 1.37880 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99671 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47306 * 54.83663 * 9 7 2 11 11 C 1.52998 * 109.47262 * 294.83680 * 9 7 2 12 12 C 1.52998 * 109.47415 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46887 * 59.99782 * 12 11 9 14 14 C 1.53002 * 109.47166 * 299.99969 * 13 12 11 15 15 C 1.53001 * 109.46763 * 174.83631 * 9 7 2 16 16 H 1.09000 * 109.46914 * 60.00429 * 15 9 7 17 17 N 1.46897 * 109.47476 * 300.00009 * 15 9 7 18 18 C 1.48528 * 111.00345 * 183.15317 * 17 15 9 19 19 C 1.54940 * 103.22871 * 159.72019 * 18 17 15 20 20 C 1.54599 * 102.91952 * 322.58278 * 19 18 17 21 21 C 1.47908 * 110.99764 * 300.54999 * 17 15 9 22 22 H 0.97000 * 120.00056 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47224 * 60.00129 * 11 9 7 24 24 H 1.09002 * 109.46946 * 300.00204 * 11 9 7 25 25 H 1.09000 * 109.46779 * 300.00391 * 12 11 9 26 26 H 1.08996 * 109.47751 * 180.02562 * 12 11 9 27 27 H 1.09004 * 109.47272 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47183 * 60.00219 * 13 12 11 29 29 H 1.08990 * 109.47182 * 299.99748 * 14 13 12 30 30 H 1.09004 * 109.46848 * 179.97438 * 14 13 12 31 31 H 1.08994 * 110.67171 * 278.15776 * 18 17 15 32 32 H 1.09006 * 110.66336 * 41.28709 * 18 17 15 33 33 H 1.08998 * 110.72371 * 204.23131 * 19 18 17 34 34 H 1.08991 * 110.87657 * 81.01311 * 19 18 17 35 35 H 1.08988 * 110.31307 * 263.03823 * 20 19 18 36 36 H 1.09004 * 110.30432 * 140.86898 * 20 19 18 37 37 H 1.08998 * 109.91935 * 333.50450 * 21 17 15 38 38 H 1.09003 * 109.91799 * 94.80113 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5571 -2.5180 -0.8399 11 6 0.4707 -2.6375 1.3093 12 6 -0.2939 -3.9628 1.3096 13 6 0.6958 -5.1225 1.1807 14 6 1.4760 -4.9841 -0.1282 15 6 2.2402 -3.6592 -0.1287 16 1 2.9340 -3.6403 0.7118 17 7 2.9894 -3.5263 -1.3852 18 6 3.9075 -4.6771 -1.5818 19 6 4.1860 -4.6522 -3.1058 20 6 2.8198 -4.2392 -3.7001 21 6 2.0772 -3.5348 -2.5495 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2340 -1.8111 1.4014 24 1 1.1646 -2.6186 2.1497 25 1 -0.9876 -3.9821 0.4691 26 1 -0.8501 -4.0612 2.2418 27 1 0.1511 -6.0667 1.1805 28 1 1.3897 -5.1032 2.0211 29 1 0.7822 -5.0035 -0.9685 30 1 2.1813 -5.8101 -0.2197 31 1 4.8303 -4.5335 -1.0198 32 1 3.4222 -5.6099 -1.2946 33 1 4.4779 -5.6406 -3.4607 34 1 4.9511 -3.9151 -3.3489 35 1 2.2663 -5.1202 -4.0243 36 1 2.9624 -3.5526 -4.5346 37 1 1.1673 -4.0827 -2.3045 38 1 1.8321 -2.5122 -2.8367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196188051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -28.716868 kcal Electronic energy + Delta-G solvation = -16555.029405 eV Core-core repulsion = 14202.670993 eV Total energy + Delta-G solvation = -2352.358412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76239 -37.80722 -34.75504 -32.94856 -31.31042 -29.65368 -28.87857 -26.46028 -23.83936 -22.76358 -21.69418 -21.36364 -19.71651 -18.27171 -17.16395 -16.60773 -16.39525 -15.41041 -15.08313 -14.76848 -14.67423 -14.17340 -13.90485 -13.76506 -13.15332 -13.01358 -12.78536 -12.54659 -12.40815 -12.16925 -12.02346 -11.88376 -11.84945 -11.79864 -11.59435 -11.25864 -11.17075 -10.66206 -10.50014 -10.28429 -8.86958 -7.99514 -6.05690 1.40641 1.41745 1.51650 2.49524 3.25556 3.39559 3.86919 3.90794 4.03203 4.14637 4.17595 4.30320 4.47367 4.57292 4.64904 4.70889 4.75850 4.84348 4.91846 4.97890 5.03198 5.06742 5.08218 5.15657 5.24508 5.31159 5.33720 5.42391 5.46186 5.48926 5.61045 5.78296 6.02625 6.10983 6.34578 6.49222 6.62816 7.04695 7.58702 9.06693 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.011915 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.179502 B = 2349.503599 C = 3233.320461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.047 0.953 9 C 0.062 3.938 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.114 4.114 13 C -0.103 4.103 14 C -0.146 4.146 15 C 0.093 3.907 16 H 0.055 0.945 17 N -0.518 5.518 18 C 0.022 3.978 19 C -0.113 4.113 20 C -0.125 4.125 21 C 0.041 3.959 22 H 0.255 0.745 23 H 0.047 0.953 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -11.863 -2.936 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.043 3.957 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.184 4.184 15 C -0.016 4.016 16 H 0.074 0.926 17 N -0.241 5.241 18 C -0.106 4.106 19 C -0.151 4.151 20 C -0.163 4.163 21 C -0.087 4.087 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.539 -11.230 -2.902 12.455 hybrid contribution -0.402 0.836 0.055 0.929 sum 4.136 -10.394 -2.847 11.543 Atomic orbital electron populations 1.70048 1.06899 1.26429 1.53294 1.25625 0.95507 1.01790 0.96049 0.85786 0.78850 0.80560 0.77780 1.20838 1.21294 1.19637 1.21399 0.92707 0.91642 1.47242 0.93509 1.18574 0.92235 0.91863 0.92979 0.98635 1.21435 0.98485 0.96143 0.98215 1.21547 0.97805 0.95431 1.00401 1.21400 0.97759 0.97856 0.97081 1.22192 0.99434 0.98377 0.98430 1.21732 0.94354 0.94190 0.91284 0.92632 1.64828 1.17311 1.40375 1.01568 1.23423 0.96925 0.92871 0.97355 1.22429 0.96707 1.02174 0.93771 1.22402 0.96550 1.00221 0.97128 1.22692 0.95300 0.99214 0.91454 0.93633 0.93454 0.95182 0.94009 0.92090 0.90540 0.91976 0.92856 0.90639 0.90752 0.92555 0.88850 0.91503 0.90223 0.91174 0.94365 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 11.71 21.45 0.25 -55.12 16 2 C 0.01 0.39 5.32 84.66 0.45 0.85 16 3 Si 0.94 46.05 29.54 68.60 2.03 48.08 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.49 -27.84 8.10 25.60 0.21 -27.63 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.06 3.13 1.29 -11.54 -0.01 3.11 16 10 H 0.00 -0.25 7.02 -2.39 -0.02 -0.27 16 11 C -0.10 -4.97 5.03 30.59 0.15 -4.81 16 12 C -0.11 -4.32 5.92 30.59 0.18 -4.13 16 13 C -0.10 -3.23 5.92 30.60 0.18 -3.05 16 14 C -0.15 -4.86 4.55 30.58 0.14 -4.72 16 15 C 0.09 3.84 1.74 44.90 0.08 3.92 16 16 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 17 N -0.52 -20.34 4.90 -857.94 -4.20 -24.55 16 18 C 0.02 0.64 6.38 86.65 0.55 1.19 16 19 C -0.11 -2.81 7.06 31.80 0.22 -2.58 16 20 C -0.12 -3.45 6.93 31.47 0.22 -3.23 16 21 C 0.04 1.56 5.16 86.44 0.45 2.01 16 22 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 23 H 0.05 2.58 6.49 -2.39 -0.02 2.57 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.86 6.01 -2.39 -0.01 1.84 16 30 H 0.08 2.15 6.00 -2.38 -0.01 2.13 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.52 5.55 -2.38 -0.01 1.50 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.46 5.30 -2.39 -0.01 1.45 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -62.73 280.99 1.90 -60.83 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.01 Total: 9.84 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 2.82 Total: -39.08 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -3.95 Total: -79.66 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -62.73 1.90 -60.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196188051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.112 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds