Wall clock time and date at job start Mon Mar 30 2020 03:14:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86801 * 120.00334 * 2 1
4 4 H 1.48503 * 109.47332 * 270.00266 * 3 2 1
5 5 H 1.48503 * 109.46974 * 29.99536 * 3 2 1
6 6 H 1.48494 * 109.47296 * 149.99802 * 3 2 1
7 7 C 1.37880 * 119.99971 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00100 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99671 * 0.02562 * 7 2 1
10 10 H 1.09002 * 109.47306 * 54.83663 * 9 7 2
11 11 C 1.52998 * 109.47262 * 294.83680 * 9 7 2
12 12 C 1.52998 * 109.47415 * 180.02562 * 11 9 7
13 13 C 1.53001 * 109.46887 * 59.99782 * 12 11 9
14 14 C 1.53002 * 109.47166 * 299.99969 * 13 12 11
15 15 C 1.53001 * 109.46763 * 174.83631 * 9 7 2
16 16 H 1.09000 * 109.46914 * 60.00429 * 15 9 7
17 17 N 1.46897 * 109.47476 * 300.00009 * 15 9 7
18 18 C 1.48528 * 111.00345 * 183.15317 * 17 15 9
19 19 C 1.54940 * 103.22871 * 159.72019 * 18 17 15
20 20 C 1.54599 * 102.91952 * 322.58278 * 19 18 17
21 21 C 1.47908 * 110.99764 * 300.54999 * 17 15 9
22 22 H 0.97000 * 120.00056 * 0.02562 * 1 2 3
23 23 H 1.09003 * 109.47224 * 60.00129 * 11 9 7
24 24 H 1.09002 * 109.46946 * 300.00204 * 11 9 7
25 25 H 1.09000 * 109.46779 * 300.00391 * 12 11 9
26 26 H 1.08996 * 109.47751 * 180.02562 * 12 11 9
27 27 H 1.09004 * 109.47272 * 180.02562 * 13 12 11
28 28 H 1.09002 * 109.47183 * 60.00219 * 13 12 11
29 29 H 1.08990 * 109.47182 * 299.99748 * 14 13 12
30 30 H 1.09004 * 109.46848 * 179.97438 * 14 13 12
31 31 H 1.08994 * 110.67171 * 278.15776 * 18 17 15
32 32 H 1.09006 * 110.66336 * 41.28709 * 18 17 15
33 33 H 1.08998 * 110.72371 * 204.23131 * 19 18 17
34 34 H 1.08991 * 110.87657 * 81.01311 * 19 18 17
35 35 H 1.08988 * 110.31307 * 263.03823 * 20 19 18
36 36 H 1.09004 * 110.30432 * 140.86898 * 20 19 18
37 37 H 1.08998 * 109.91935 * 333.50450 * 21 17 15
38 38 H 1.09003 * 109.91799 * 94.80113 * 21 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4991 0.0005
10 1 0.5571 -2.5180 -0.8399
11 6 0.4707 -2.6375 1.3093
12 6 -0.2939 -3.9628 1.3096
13 6 0.6958 -5.1225 1.1807
14 6 1.4760 -4.9841 -0.1282
15 6 2.2402 -3.6592 -0.1287
16 1 2.9340 -3.6403 0.7118
17 7 2.9894 -3.5263 -1.3852
18 6 3.9075 -4.6771 -1.5818
19 6 4.1860 -4.6522 -3.1058
20 6 2.8198 -4.2392 -3.7001
21 6 2.0772 -3.5348 -2.5495
22 1 -0.4850 0.8400 -0.0004
23 1 -0.2340 -1.8111 1.4014
24 1 1.1646 -2.6186 2.1497
25 1 -0.9876 -3.9821 0.4691
26 1 -0.8501 -4.0612 2.2418
27 1 0.1511 -6.0667 1.1805
28 1 1.3897 -5.1032 2.0211
29 1 0.7822 -5.0035 -0.9685
30 1 2.1813 -5.8101 -0.2197
31 1 4.8303 -4.5335 -1.0198
32 1 3.4222 -5.6099 -1.2946
33 1 4.4779 -5.6406 -3.4607
34 1 4.9511 -3.9151 -3.3489
35 1 2.2663 -5.1202 -4.0243
36 1 2.9624 -3.5526 -4.5346
37 1 1.1673 -4.0827 -2.3045
38 1 1.8321 -2.5122 -2.8367
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000196188051.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:43
Heat of formation + Delta-G solvation = -28.716868 kcal
Electronic energy + Delta-G solvation = -16555.029405 eV
Core-core repulsion = 14202.670993 eV
Total energy + Delta-G solvation = -2352.358412 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.76239 -37.80722 -34.75504 -32.94856 -31.31042 -29.65368 -28.87857 -26.46028
-23.83936 -22.76358 -21.69418 -21.36364 -19.71651 -18.27171 -17.16395 -16.60773
-16.39525 -15.41041 -15.08313 -14.76848 -14.67423 -14.17340 -13.90485 -13.76506
-13.15332 -13.01358 -12.78536 -12.54659 -12.40815 -12.16925 -12.02346 -11.88376
-11.84945 -11.79864 -11.59435 -11.25864 -11.17075 -10.66206 -10.50014 -10.28429
-8.86958 -7.99514 -6.05690 1.40641 1.41745 1.51650 2.49524 3.25556
3.39559 3.86919 3.90794 4.03203 4.14637 4.17595 4.30320 4.47367
4.57292 4.64904 4.70889 4.75850 4.84348 4.91846 4.97890 5.03198
5.06742 5.08218 5.15657 5.24508 5.31159 5.33720 5.42391 5.46186
5.48926 5.61045 5.78296 6.02625 6.10983 6.34578 6.49222 6.62816
7.04695 7.58702 9.06693
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.021952 B = 0.011915 C = 0.008658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1275.179502 B = 2349.503599 C = 3233.320461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.007 3.993
3 Si 0.943 3.057
4 H -0.282 1.282
5 H -0.287 1.287
6 H -0.272 1.272
7 C -0.491 4.491
8 H 0.047 0.953
9 C 0.062 3.938
10 H -0.004 1.004
11 C -0.104 4.104
12 C -0.114 4.114
13 C -0.103 4.103
14 C -0.146 4.146
15 C 0.093 3.907
16 H 0.055 0.945
17 N -0.518 5.518
18 C 0.022 3.978
19 C -0.113 4.113
20 C -0.125 4.125
21 C 0.041 3.959
22 H 0.255 0.745
23 H 0.047 0.953
24 H 0.029 0.971
25 H 0.041 0.959
26 H 0.060 0.940
27 H 0.076 0.924
28 H 0.062 0.938
29 H 0.053 0.947
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.056 0.944
33 H 0.093 0.907
34 H 0.066 0.934
35 H 0.079 0.921
36 H 0.069 0.931
37 H 0.038 0.962
38 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.375 -11.863 -2.936 12.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.190 4.190
3 Si 0.770 3.230
4 H -0.208 1.208
5 H -0.213 1.213
6 H -0.196 1.196
7 C -0.530 4.530
8 H 0.065 0.935
9 C 0.043 3.957
10 H 0.014 0.986
11 C -0.143 4.143
12 C -0.152 4.152
13 C -0.141 4.141
14 C -0.184 4.184
15 C -0.016 4.016
16 H 0.074 0.926
17 N -0.241 5.241
18 C -0.106 4.106
19 C -0.151 4.151
20 C -0.163 4.163
21 C -0.087 4.087
22 H 0.064 0.936
23 H 0.065 0.935
24 H 0.048 0.952
25 H 0.060 0.940
26 H 0.079 0.921
27 H 0.095 0.905
28 H 0.080 0.920
29 H 0.071 0.929
30 H 0.094 0.906
31 H 0.092 0.908
32 H 0.074 0.926
33 H 0.112 0.888
34 H 0.085 0.915
35 H 0.098 0.902
36 H 0.088 0.912
37 H 0.056 0.944
38 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 4.539 -11.230 -2.902 12.455
hybrid contribution -0.402 0.836 0.055 0.929
sum 4.136 -10.394 -2.847 11.543
Atomic orbital electron populations
1.70048 1.06899 1.26429 1.53294 1.25625 0.95507 1.01790 0.96049
0.85786 0.78850 0.80560 0.77780 1.20838 1.21294 1.19637 1.21399
0.92707 0.91642 1.47242 0.93509 1.18574 0.92235 0.91863 0.92979
0.98635 1.21435 0.98485 0.96143 0.98215 1.21547 0.97805 0.95431
1.00401 1.21400 0.97759 0.97856 0.97081 1.22192 0.99434 0.98377
0.98430 1.21732 0.94354 0.94190 0.91284 0.92632 1.64828 1.17311
1.40375 1.01568 1.23423 0.96925 0.92871 0.97355 1.22429 0.96707
1.02174 0.93771 1.22402 0.96550 1.00221 0.97128 1.22692 0.95300
0.99214 0.91454 0.93633 0.93454 0.95182 0.94009 0.92090 0.90540
0.91976 0.92856 0.90639 0.90752 0.92555 0.88850 0.91503 0.90223
0.91174 0.94365 0.94146
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.37 11.71 21.45 0.25 -55.12 16
2 C 0.01 0.39 5.32 84.66 0.45 0.85 16
3 Si 0.94 46.05 29.54 68.60 2.03 48.08 16
4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16
5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
6 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16
7 C -0.49 -27.84 8.10 25.60 0.21 -27.63 16
8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16
9 C 0.06 3.13 1.29 -11.54 -0.01 3.11 16
10 H 0.00 -0.25 7.02 -2.39 -0.02 -0.27 16
11 C -0.10 -4.97 5.03 30.59 0.15 -4.81 16
12 C -0.11 -4.32 5.92 30.59 0.18 -4.13 16
13 C -0.10 -3.23 5.92 30.60 0.18 -3.05 16
14 C -0.15 -4.86 4.55 30.58 0.14 -4.72 16
15 C 0.09 3.84 1.74 44.90 0.08 3.92 16
16 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
17 N -0.52 -20.34 4.90 -857.94 -4.20 -24.55 16
18 C 0.02 0.64 6.38 86.65 0.55 1.19 16
19 C -0.11 -2.81 7.06 31.80 0.22 -2.58 16
20 C -0.12 -3.45 6.93 31.47 0.22 -3.23 16
21 C 0.04 1.56 5.16 86.44 0.45 2.01 16
22 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16
23 H 0.05 2.58 6.49 -2.39 -0.02 2.57 16
24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
25 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16
26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
27 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16
28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
29 H 0.05 1.86 6.01 -2.39 -0.01 1.84 16
30 H 0.08 2.15 6.00 -2.38 -0.01 2.13 16
31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
32 H 0.06 1.52 5.55 -2.38 -0.01 1.50 16
33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
36 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
37 H 0.04 1.46 5.30 -2.39 -0.01 1.45 16
38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
Total: -1.00 -62.73 280.99 1.90 -60.83
By element:
Atomic # 1 Polarization: 8.83 SS G_CDS: 1.01 Total: 9.84 kcal
Atomic # 6 Polarization: -41.90 SS G_CDS: 2.82 Total: -39.08 kcal
Atomic # 7 Polarization: -75.71 SS G_CDS: -3.95 Total: -79.66 kcal
Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal
Total: -62.73 1.90 -60.83 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000196188051.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.112 kcal
(2) G-P(sol) polarization free energy of solvation -62.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.717 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds