Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99691 * 2 1 4 4 H 1.48509 * 109.47123 * 240.00262 * 3 2 1 5 5 H 1.48499 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47279 * 120.00383 * 3 2 1 7 7 C 1.37874 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47235 * 300.00269 * 9 7 2 11 11 C 1.52997 * 109.47050 * 60.00254 * 9 7 2 12 12 C 1.53004 * 109.47221 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47342 * 300.00373 * 12 11 9 14 14 C 1.53005 * 109.47128 * 59.99474 * 13 12 11 15 15 C 1.52992 * 109.47466 * 300.00167 * 14 13 12 16 16 H 1.09005 * 109.47126 * 300.00078 * 15 14 13 17 17 N 1.46894 * 109.47492 * 179.97438 * 15 14 13 18 18 C 1.48528 * 111.00168 * 306.61707 * 17 15 14 19 19 C 1.54937 * 103.23183 * 159.71608 * 18 17 15 20 20 C 1.54594 * 102.92127 * 322.58901 * 19 18 17 21 21 C 1.47905 * 110.99647 * 64.01069 * 17 15 14 22 22 H 0.96994 * 120.00253 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47090 * 59.99851 * 11 9 7 24 24 H 1.08998 * 109.47431 * 299.99956 * 11 9 7 25 25 H 1.08996 * 109.46919 * 180.02562 * 12 11 9 26 26 H 1.09006 * 109.46664 * 60.00614 * 12 11 9 27 27 H 1.09005 * 109.46917 * 299.99731 * 13 12 11 28 28 H 1.08997 * 109.47243 * 180.02562 * 13 12 11 29 29 H 1.09005 * 109.47012 * 60.00315 * 14 13 12 30 30 H 1.08999 * 109.46826 * 179.97438 * 14 13 12 31 31 H 1.09007 * 110.66606 * 278.15372 * 18 17 15 32 32 H 1.09000 * 110.66851 * 41.28053 * 18 17 15 33 33 H 1.08996 * 110.72794 * 204.22729 * 19 18 17 34 34 H 1.09001 * 110.87587 * 81.01351 * 19 18 17 35 35 H 1.08999 * 110.30454 * 263.04001 * 20 19 18 36 36 H 1.09001 * 110.39567 * 140.91378 * 20 19 18 37 37 H 1.09001 * 109.91852 * 333.50703 * 21 17 15 38 38 H 1.08996 * 109.91877 * 94.60929 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3711 -2.5800 -1.2495 12 6 -0.3934 -3.9053 -1.2498 13 6 0.6012 -5.0678 -1.2506 14 6 1.4813 -4.9870 -0.0017 15 6 2.2458 -3.6618 -0.0013 16 1 2.8721 -3.6034 -0.8916 17 7 3.0903 -3.5838 1.1981 18 6 2.2911 -3.8185 2.4279 19 6 3.3605 -4.2209 3.4743 20 6 4.3529 -5.0688 2.6458 21 6 4.1283 -4.6373 1.1847 22 1 -0.4850 0.8400 0.0004 23 1 0.9975 -2.5220 -2.1397 24 1 -0.3373 -1.7515 -1.2491 25 1 -1.0200 -3.9630 -2.1398 26 1 -1.0198 -3.9636 -0.3596 27 1 1.2275 -5.0095 -2.1409 28 1 0.0566 -6.0120 -1.2514 29 1 0.8549 -5.0453 0.8886 30 1 2.1896 -5.8155 -0.0021 31 1 1.7782 -2.9064 2.7332 32 1 1.5785 -4.6289 2.2749 33 1 2.9156 -4.8169 4.2710 34 1 3.8544 -3.3397 3.8836 35 1 4.1347 -6.1300 2.7647 36 1 5.3783 -4.8577 2.9493 37 1 3.7867 -5.4878 0.5947 38 1 5.0532 -4.2419 0.7649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196188057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = -11.348842 kcal Electronic energy + Delta-G solvation = -16533.475242 eV Core-core repulsion = 14181.869964 eV Total energy + Delta-G solvation = -2351.605278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22420 -36.31445 -32.73771 -31.51123 -29.40874 -28.36554 -27.34129 -24.47430 -22.33822 -20.97548 -20.56205 -19.72347 -18.12762 -16.24702 -15.57764 -15.19642 -14.42574 -13.88433 -13.60444 -13.32230 -13.07119 -12.69271 -12.22975 -11.95002 -11.61960 -11.56844 -10.97855 -10.86907 -10.82368 -10.61451 -10.56650 -10.44079 -10.21890 -10.08947 -9.88235 -9.69298 -9.42230 -8.84684 -8.58311 -8.15645 -7.38902 -5.81339 -3.82728 3.43213 3.46746 3.51159 4.58764 4.74417 5.12244 5.16667 5.33342 5.44597 5.51186 5.60116 5.74988 5.80218 5.91335 6.02242 6.10174 6.13929 6.19748 6.30633 6.37702 6.41094 6.46830 6.49257 6.58385 6.67957 6.71874 6.82360 6.94529 7.09896 7.26432 7.45292 7.75470 7.86636 7.96057 8.15403 8.31897 8.67302 9.21525 9.79244 11.24970 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.011710 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.938490 B = 2390.568852 C = 3275.392438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.482 4.482 8 H 0.060 0.940 9 C 0.063 3.937 10 H 0.025 0.975 11 C -0.112 4.112 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.154 4.154 15 C 0.087 3.913 16 H 0.066 0.934 17 N -0.488 5.488 18 C 0.035 3.965 19 C -0.124 4.124 20 C -0.128 4.128 21 C 0.026 3.974 22 H 0.256 0.744 23 H 0.032 0.968 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -9.853 2.292 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.045 3.955 10 H 0.043 0.957 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.146 4.146 14 C -0.193 4.193 15 C -0.021 4.021 16 H 0.084 0.916 17 N -0.210 5.210 18 C -0.093 4.093 19 C -0.162 4.162 20 C -0.166 4.166 21 C -0.102 4.102 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.615 -9.188 2.289 10.135 hybrid contribution 0.097 0.049 -0.084 0.137 sum 3.712 -9.139 2.205 10.108 Atomic orbital electron populations 1.69864 1.05769 1.26007 1.52427 1.24948 0.94753 0.98785 0.95988 0.86732 0.79535 0.83637 0.78449 1.20612 1.21758 1.20484 1.21132 0.93226 0.89876 1.47838 0.92145 1.18627 0.91565 0.91184 0.94172 0.95719 1.21649 0.99575 0.95195 0.98622 1.21646 0.97470 0.96798 0.99851 1.21423 0.97780 0.97822 0.97617 1.22292 0.99015 0.99395 0.98550 1.22023 0.94261 0.94218 0.91644 0.91558 1.64974 1.11605 1.42352 1.02099 1.23250 0.95205 1.00656 0.90190 1.22482 0.96906 0.99466 0.97378 1.22355 0.99690 0.98922 0.95653 1.22924 0.97353 0.94153 0.95795 0.93390 0.94870 0.88797 0.94007 0.93143 0.92814 0.93830 0.92052 0.93576 0.89569 0.93919 0.92073 0.91094 0.92437 0.91798 0.94243 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.32 55.43 0.63 -25.27 16 2 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.48 -13.24 8.19 -34.44 -0.28 -13.52 16 8 H 0.06 1.70 7.67 -52.49 -0.40 1.30 16 9 C 0.06 1.54 1.49 -91.77 -0.14 1.41 16 10 H 0.02 0.67 7.12 -51.93 -0.37 0.30 16 11 C -0.11 -2.63 4.98 -26.73 -0.13 -2.76 16 12 C -0.12 -2.34 5.92 -26.73 -0.16 -2.49 16 13 C -0.11 -1.86 5.92 -26.73 -0.16 -2.02 16 14 C -0.15 -2.74 4.50 -26.73 -0.12 -2.86 16 15 C 0.09 1.81 1.61 -67.72 -0.11 1.70 16 16 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 17 N -0.49 -9.65 4.79 -222.50 -1.07 -10.71 16 18 C 0.03 0.63 5.46 -1.90 -0.01 0.62 16 19 C -0.12 -1.84 7.06 -24.87 -0.18 -2.02 16 20 C -0.13 -1.76 6.93 -25.37 -0.18 -1.94 16 21 C 0.03 0.42 6.47 -2.75 -0.02 0.41 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.11 5.95 -51.93 -0.31 0.81 16 30 H 0.05 0.75 6.19 -51.93 -0.32 0.43 16 31 H 0.09 1.77 7.71 -51.92 -0.40 1.37 16 32 H 0.04 0.75 5.42 -51.93 -0.28 0.47 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.62 5.76 -51.93 -0.30 0.32 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -28.06 280.55 -9.29 -37.34 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.48 Total: -0.44 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -1.57 Total: -22.06 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.44 Total: -35.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.06 -9.29 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196188057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.995 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds