Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99691 * 2 1 4 4 H 1.48509 * 109.47123 * 240.00262 * 3 2 1 5 5 H 1.48499 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47279 * 120.00383 * 3 2 1 7 7 C 1.37874 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47235 * 300.00269 * 9 7 2 11 11 C 1.52997 * 109.47050 * 60.00254 * 9 7 2 12 12 C 1.53004 * 109.47221 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47342 * 300.00373 * 12 11 9 14 14 C 1.53005 * 109.47128 * 59.99474 * 13 12 11 15 15 C 1.52992 * 109.47466 * 300.00167 * 14 13 12 16 16 H 1.09005 * 109.47126 * 300.00078 * 15 14 13 17 17 N 1.46894 * 109.47492 * 179.97438 * 15 14 13 18 18 C 1.48528 * 111.00168 * 306.61707 * 17 15 14 19 19 C 1.54937 * 103.23183 * 159.71608 * 18 17 15 20 20 C 1.54594 * 102.92127 * 322.58901 * 19 18 17 21 21 C 1.47905 * 110.99647 * 64.01069 * 17 15 14 22 22 H 0.96994 * 120.00253 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47090 * 59.99851 * 11 9 7 24 24 H 1.08998 * 109.47431 * 299.99956 * 11 9 7 25 25 H 1.08996 * 109.46919 * 180.02562 * 12 11 9 26 26 H 1.09006 * 109.46664 * 60.00614 * 12 11 9 27 27 H 1.09005 * 109.46917 * 299.99731 * 13 12 11 28 28 H 1.08997 * 109.47243 * 180.02562 * 13 12 11 29 29 H 1.09005 * 109.47012 * 60.00315 * 14 13 12 30 30 H 1.08999 * 109.46826 * 179.97438 * 14 13 12 31 31 H 1.09007 * 110.66606 * 278.15372 * 18 17 15 32 32 H 1.09000 * 110.66851 * 41.28053 * 18 17 15 33 33 H 1.08996 * 110.72794 * 204.22729 * 19 18 17 34 34 H 1.09001 * 110.87587 * 81.01351 * 19 18 17 35 35 H 1.08999 * 110.30454 * 263.04001 * 20 19 18 36 36 H 1.09001 * 110.39567 * 140.91378 * 20 19 18 37 37 H 1.09001 * 109.91852 * 333.50703 * 21 17 15 38 38 H 1.08996 * 109.91877 * 94.60929 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3711 -2.5800 -1.2495 12 6 -0.3934 -3.9053 -1.2498 13 6 0.6012 -5.0678 -1.2506 14 6 1.4813 -4.9870 -0.0017 15 6 2.2458 -3.6618 -0.0013 16 1 2.8721 -3.6034 -0.8916 17 7 3.0903 -3.5838 1.1981 18 6 2.2911 -3.8185 2.4279 19 6 3.3605 -4.2209 3.4743 20 6 4.3529 -5.0688 2.6458 21 6 4.1283 -4.6373 1.1847 22 1 -0.4850 0.8400 0.0004 23 1 0.9975 -2.5220 -2.1397 24 1 -0.3373 -1.7515 -1.2491 25 1 -1.0200 -3.9630 -2.1398 26 1 -1.0198 -3.9636 -0.3596 27 1 1.2275 -5.0095 -2.1409 28 1 0.0566 -6.0120 -1.2514 29 1 0.8549 -5.0453 0.8886 30 1 2.1896 -5.8155 -0.0021 31 1 1.7782 -2.9064 2.7332 32 1 1.5785 -4.6289 2.2749 33 1 2.9156 -4.8169 4.2710 34 1 3.8544 -3.3397 3.8836 35 1 4.1347 -6.1300 2.7647 36 1 5.3783 -4.8577 2.9493 37 1 3.7867 -5.4878 0.5947 38 1 5.0532 -4.2419 0.7649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196188057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = -27.565395 kcal Electronic energy + Delta-G solvation = -16534.178444 eV Core-core repulsion = 14181.869964 eV Total energy + Delta-G solvation = -2352.308480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73312 -37.83198 -34.75885 -32.94984 -31.24393 -29.68665 -28.89515 -26.45864 -23.84000 -22.65862 -21.92026 -21.19012 -19.77234 -18.28289 -17.11836 -16.52890 -16.38361 -15.36754 -15.21172 -14.83946 -14.54253 -14.30331 -13.96871 -13.62234 -13.13086 -13.06385 -12.76089 -12.55267 -12.40637 -12.16769 -12.01604 -11.89685 -11.83677 -11.78709 -11.55378 -11.28833 -11.10943 -10.68159 -10.50585 -10.27190 -8.86675 -7.96664 -6.04841 1.42011 1.43262 1.50630 2.50177 3.25298 3.38951 3.85915 3.91493 4.03829 4.14536 4.17679 4.30994 4.45886 4.55912 4.64703 4.69735 4.77781 4.84392 4.91770 4.99618 5.03354 5.05789 5.08421 5.18315 5.20296 5.27403 5.36434 5.44468 5.45424 5.48032 5.63189 5.79862 6.05078 6.15826 6.34458 6.51807 6.63299 7.04969 7.59679 9.07063 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.011710 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.938490 B = 2390.568852 C = 3275.392438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.494 4.494 8 H 0.047 0.953 9 C 0.065 3.935 10 H -0.008 1.008 11 C -0.108 4.108 12 C -0.114 4.114 13 C -0.103 4.103 14 C -0.145 4.145 15 C 0.094 3.906 16 H 0.053 0.947 17 N -0.520 5.520 18 C 0.034 3.966 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.024 3.976 22 H 0.255 0.745 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -11.887 2.476 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.047 3.953 10 H 0.010 0.990 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.141 4.141 14 C -0.184 4.184 15 C -0.014 4.014 16 H 0.071 0.929 17 N -0.242 5.242 18 C -0.093 4.093 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.103 4.103 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.645 -11.229 2.472 12.400 hybrid contribution -0.217 0.721 -0.136 0.765 sum 4.428 -10.508 2.336 11.639 Atomic orbital electron populations 1.70006 1.06850 1.26439 1.53233 1.25628 0.95537 1.01780 0.96039 0.85838 0.78441 0.80201 0.78440 1.20027 1.21332 1.20362 1.21403 0.92794 0.91670 1.47344 0.93437 1.18516 0.91942 0.91849 0.93015 0.99017 1.21481 0.98888 0.96605 0.97729 1.21547 0.97776 0.95451 1.00375 1.21404 0.97303 0.97978 0.97457 1.22188 0.99189 0.98183 0.98802 1.21734 0.93544 0.94326 0.91838 0.92902 1.64825 1.12478 1.44901 1.02030 1.23177 0.96194 0.99084 0.90876 1.22455 0.96108 0.99847 0.97180 1.22339 1.00134 0.99942 0.93245 1.22991 0.95951 0.93429 0.97976 0.93604 0.95621 0.92374 0.92215 0.93876 0.92199 0.90548 0.92433 0.91035 0.93518 0.93162 0.89467 0.91952 0.89983 0.90274 0.93132 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.04 11.32 21.45 0.24 -54.80 16 2 C 0.01 0.38 5.30 84.65 0.45 0.83 16 3 Si 0.94 45.99 29.54 68.60 2.03 48.02 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.49 -28.04 8.19 25.60 0.21 -27.83 16 8 H 0.05 2.76 7.67 -2.91 -0.02 2.73 16 9 C 0.07 3.31 1.49 -11.54 -0.02 3.29 16 10 H -0.01 -0.47 7.12 -2.39 -0.02 -0.49 16 11 C -0.11 -5.22 4.98 30.59 0.15 -5.07 16 12 C -0.11 -4.34 5.92 30.59 0.18 -4.16 16 13 C -0.10 -3.28 5.92 30.59 0.18 -3.10 16 14 C -0.14 -4.86 4.50 30.59 0.14 -4.72 16 15 C 0.09 3.91 1.61 44.92 0.07 3.98 16 16 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 17 N -0.52 -20.38 4.79 -857.86 -4.11 -24.49 16 18 C 0.03 1.25 5.46 86.65 0.47 1.72 16 19 C -0.12 -3.25 7.06 31.80 0.22 -3.03 16 20 C -0.12 -2.86 6.93 31.47 0.22 -2.64 16 21 C 0.02 0.73 6.47 86.45 0.56 1.29 16 22 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.99 5.95 -2.38 -0.01 1.97 16 30 H 0.07 2.06 6.19 -2.39 -0.01 2.05 16 31 H 0.05 2.02 7.71 -2.38 -0.02 2.00 16 32 H 0.05 1.72 5.42 -2.39 -0.01 1.71 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.41 5.76 -2.39 -0.01 1.40 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -62.41 280.55 2.01 -60.40 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.01 Total: 10.31 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 2.84 Total: -39.43 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -3.87 Total: -79.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -62.41 2.01 -60.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196188057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.832 kcal (2) G-P(sol) polarization free energy of solvation -62.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds