Wall clock time and date at job start Mon Mar 30 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47157 * 239.99697 * 3 2 1 5 5 H 1.48495 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47105 * 119.99852 * 3 2 1 7 7 C 1.37877 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00547 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47244 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46769 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.36347 * 52.67142 * 13 12 11 15 15 C 1.54587 * 110.40164 * 290.21727 * 13 12 11 16 16 C 1.55926 * 104.64422 * 241.21413 * 15 13 12 17 17 H 1.09000 * 115.92362 * 160.03383 * 16 15 13 18 18 C 1.55930 * 104.49577 * 289.72076 * 16 15 13 19 19 C 1.54582 * 104.64089 * 70.28091 * 18 16 15 20 20 C 1.55922 * 104.64810 * 359.97438 * 19 18 16 21 21 H 1.08991 * 116.52965 * 160.39599 * 20 19 18 22 22 C 1.56950 * 100.65276 * 33.77808 * 16 15 13 23 23 H 0.97003 * 120.00239 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46616 * 60.00519 * 9 7 2 25 25 H 1.09002 * 109.47100 * 300.00658 * 9 7 2 26 26 H 1.08995 * 109.46859 * 60.00696 * 10 9 7 27 27 H 1.09002 * 109.47639 * 300.00364 * 10 9 7 28 28 H 1.00899 * 110.99995 * 56.04730 * 11 10 9 29 29 H 1.09002 * 109.47401 * 59.99808 * 12 11 10 30 30 H 1.09001 * 109.46874 * 299.99821 * 12 11 10 31 31 H 1.08999 * 110.40102 * 0.02562 * 15 13 12 32 32 H 1.09002 * 110.39982 * 122.41826 * 15 13 12 33 33 H 1.08995 * 110.40298 * 189.07162 * 18 16 15 34 34 H 1.09001 * 110.40159 * 311.37190 * 18 16 15 35 35 H 1.09003 * 110.40028 * 241.20690 * 19 18 16 36 36 H 1.09000 * 110.40138 * 118.79290 * 19 18 16 37 37 H 1.08998 * 112.02720 * 189.69938 * 22 16 15 38 38 H 1.08994 * 112.02827 * 63.17276 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5107 -4.9343 0.0020 12 6 2.4353 -6.0759 0.0024 13 6 1.6351 -7.3800 0.0022 14 1 0.9089 -7.3794 -0.8105 15 6 0.9261 -7.5774 1.3617 16 6 1.5213 -8.9026 1.9280 17 1 1.4171 -9.0508 3.0028 18 6 0.9329 -10.0180 1.0109 19 6 1.6419 -9.8207 -0.3484 20 6 2.5915 -8.6043 -0.1249 21 1 3.4154 -8.4940 -0.8298 22 6 2.9891 -8.8196 1.3784 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8910 27 1 2.8713 -3.6048 -0.8890 28 1 0.8740 -4.9845 -0.7791 29 1 3.0633 -6.0346 0.8923 30 1 3.0632 -6.0352 -0.8877 31 1 1.1472 -6.7451 2.0299 32 1 -0.1500 -7.6748 1.2183 33 1 1.1593 -11.0034 1.4181 34 1 -0.1442 -9.8912 0.9017 35 1 0.9137 -9.5956 -1.1277 36 1 2.2169 -10.7091 -0.6096 37 1 3.5349 -9.7512 1.5278 38 1 3.5300 -7.9649 1.7845 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223575257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:30 Heat of formation + Delta-G solvation = -39.962403 kcal Electronic energy + Delta-G solvation = -15223.641489 eV Core-core repulsion = 12870.795434 eV Total energy + Delta-G solvation = -2352.846055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17212 -37.43307 -35.10771 -32.68890 -30.53589 -30.09048 -28.52420 -26.55041 -24.65936 -22.49718 -21.95843 -20.64064 -19.53322 -18.51635 -17.13946 -16.57241 -16.33631 -16.22610 -15.89149 -15.08130 -14.66850 -14.19924 -13.84224 -13.34158 -13.22760 -12.93905 -12.78489 -12.50093 -12.41901 -12.13813 -12.00179 -11.98526 -11.76196 -11.63585 -11.45459 -11.38879 -11.30401 -11.15072 -10.65173 -10.56892 -9.25964 -8.21008 -6.33119 1.39786 1.43429 1.51444 2.40166 3.12157 3.27986 3.60613 3.66154 3.78233 4.16529 4.27674 4.39264 4.44900 4.50468 4.55712 4.59742 4.61811 4.65184 4.77849 4.86331 4.89547 4.99458 5.05296 5.12891 5.20357 5.27376 5.32699 5.37255 5.42439 5.46292 5.51509 5.60482 5.65826 5.77718 6.13837 6.28582 6.54869 6.83839 7.36273 8.91069 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.069896 B = 0.004322 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.498027 B = 6476.657992 C = 6573.499515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.085 3.915 11 N -0.696 5.696 12 C 0.069 3.931 13 C -0.081 4.081 14 H 0.065 0.935 15 C -0.107 4.107 16 C -0.107 4.107 17 H 0.101 0.899 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.098 4.098 21 H 0.102 0.898 22 C -0.123 4.123 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.007 1.007 26 H 0.055 0.945 27 H 0.017 0.983 28 H 0.336 0.664 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -20.185 0.679 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.044 4.044 11 N -0.327 5.327 12 C -0.060 4.060 13 C -0.100 4.100 14 H 0.083 0.917 15 C -0.145 4.145 16 C -0.125 4.125 17 H 0.119 0.881 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.116 4.116 21 H 0.120 0.880 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.154 0.846 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.687 -20.083 1.358 20.668 hybrid contribution 0.287 1.271 -0.926 1.598 sum 4.975 -18.813 0.433 19.464 Atomic orbital electron populations 1.70103 1.07878 1.27928 1.51276 1.25992 0.95779 1.03433 0.94499 0.85454 0.78242 0.77836 0.79224 1.19070 1.20680 1.19139 1.21594 0.93529 0.92297 1.51209 0.92179 1.18916 0.94292 0.92350 0.94969 1.21760 0.95559 0.88635 0.98481 1.60477 1.20416 1.01814 1.49944 1.22041 0.94185 0.89989 0.99789 1.22214 0.96925 0.92913 0.97915 0.91672 1.22546 0.98870 0.97156 0.95878 1.23632 0.95410 0.94739 0.98707 0.88069 1.22594 0.99400 0.98438 0.95047 1.22575 0.97979 0.97612 0.97223 1.23602 0.96789 0.93962 0.97288 0.88025 1.23588 0.96192 1.01296 0.94935 0.92686 0.99097 0.98838 0.92655 0.96518 0.84627 0.91774 0.95667 0.93126 0.92637 0.90899 0.92182 0.92118 0.90679 0.90158 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.78 5.23 29.85 0.16 1.93 16 10 C 0.08 3.72 5.62 86.30 0.49 4.21 16 11 N -0.70 -25.80 6.38 -513.88 -3.28 -29.08 16 12 C 0.07 2.03 4.82 86.30 0.42 2.44 16 13 C -0.08 -1.96 2.47 -9.26 -0.02 -1.98 16 14 H 0.06 1.62 7.84 -2.39 -0.02 1.60 16 15 C -0.11 -2.65 5.73 32.15 0.18 -2.47 16 16 C -0.11 -2.06 5.19 -7.38 -0.04 -2.10 16 17 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.12 -1.95 6.21 32.15 0.20 -1.75 16 19 C -0.12 -1.93 6.21 32.14 0.20 -1.73 16 20 C -0.10 -1.87 4.59 -7.39 -0.03 -1.90 16 21 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 22 C -0.12 -2.28 6.34 33.38 0.21 -2.07 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.34 12.20 8.73 -89.69 -0.78 11.42 16 29 H 0.06 1.93 7.34 -2.39 -0.02 1.91 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 1.49 7.72 -2.39 -0.02 1.47 16 32 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.04 7.84 -2.39 -0.02 1.02 16 35 H 0.06 1.04 7.84 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.24 7.34 -2.39 -0.02 1.22 16 Total: -1.00 -63.85 297.45 1.71 -62.14 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.22 Total: 14.46 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 2.45 Total: -36.76 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -2.99 Total: -86.71 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.85 1.71 -62.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223575257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.178 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds