Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99449 * 2 1 4 4 H 1.48506 * 109.46968 * 239.99727 * 3 2 1 5 5 H 1.48491 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46813 * 120.00508 * 3 2 1 7 7 C 1.37869 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47051 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47052 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99742 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.35842 * 32.67780 * 13 12 11 15 15 C 1.54575 * 110.40550 * 270.22221 * 13 12 11 16 16 C 1.55928 * 104.64645 * 241.20857 * 15 13 12 17 17 H 1.08995 * 115.92073 * 160.83829 * 16 15 13 18 18 C 1.56190 * 104.55732 * 289.71924 * 16 15 13 19 19 C 1.54581 * 104.51852 * 70.20619 * 18 16 15 20 20 C 1.55923 * 110.39852 * 154.99924 * 13 12 11 21 21 H 1.09001 * 115.92544 * 317.95468 * 20 13 12 22 22 C 1.56948 * 100.64670 * 33.78015 * 16 15 13 23 23 H 0.96992 * 120.00685 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46897 * 60.00694 * 9 7 2 25 25 H 1.08993 * 109.46990 * 300.00324 * 9 7 2 26 26 H 1.08995 * 109.47290 * 59.99903 * 10 9 7 27 27 H 1.09001 * 109.47097 * 300.00116 * 10 9 7 28 28 H 1.08996 * 109.47069 * 59.99757 * 11 10 9 29 29 H 1.09001 * 109.46857 * 299.99764 * 11 10 9 30 30 H 1.00904 * 111.00041 * 56.04593 * 12 11 10 31 31 H 1.09003 * 110.40384 * 0.02562 * 15 13 12 32 32 H 1.09004 * 110.39964 * 122.42005 * 15 13 12 33 33 H 1.09004 * 110.44228 * 311.46364 * 18 16 15 34 34 H 1.09004 * 110.48652 * 188.96913 * 18 16 15 35 35 H 1.09002 * 110.40287 * 241.23434 * 19 18 16 36 36 H 1.08998 * 110.40286 * 118.93181 * 19 18 16 37 37 H 1.09001 * 112.02654 * 189.68975 * 22 16 15 38 38 H 1.09002 * 112.03026 * 63.17153 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4353 -6.1035 -0.0018 13 6 1.7351 -7.3949 -0.0018 14 1 0.7980 -7.3181 -0.5532 15 6 1.4738 -7.8663 1.4469 16 6 2.2455 -9.2159 1.5676 17 1 2.4617 -9.5520 2.5817 18 6 1.4366 -10.2118 0.6770 19 6 1.6983 -9.7374 -0.7707 20 6 2.6401 -8.5039 -0.6201 21 1 3.2000 -8.2202 -1.5113 22 6 3.4770 -8.9299 0.6376 23 1 -0.4851 0.8399 0.0004 24 1 0.6243 -2.5567 -0.8904 25 1 0.6248 -2.5570 0.8896 26 1 2.8722 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8543 -5.0446 -0.8913 29 1 0.8537 -5.0451 0.8886 30 1 3.0702 -6.0368 0.7796 31 1 1.8645 -7.1397 2.1593 32 1 0.4073 -8.0227 1.6091 33 1 0.3733 -10.1532 0.9098 34 1 1.8011 -11.2297 0.8152 35 1 0.7637 -9.4456 -1.2498 36 1 2.1897 -10.5228 -1.3450 37 1 4.0661 -9.8279 0.4516 38 1 4.0930 -8.1133 1.0143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227003526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = -23.109200 kcal Electronic energy + Delta-G solvation = -15196.680470 eV Core-core repulsion = 12844.565225 eV Total energy + Delta-G solvation = -2352.115245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31316 -35.74221 -33.30928 -31.24924 -29.61827 -28.57086 -27.35873 -25.48378 -22.56521 -21.48911 -20.24101 -19.84001 -18.75534 -16.37140 -16.21008 -15.34177 -15.19979 -14.66500 -14.42690 -13.54532 -13.28125 -12.66299 -12.38563 -12.07506 -11.77678 -11.49084 -11.35720 -11.27724 -11.08602 -10.99460 -10.81659 -10.76016 -10.55392 -10.50803 -10.44531 -10.11651 -9.65187 -9.26567 -9.01115 -8.30768 -8.03312 -5.96054 -3.98171 3.36177 3.40069 3.43009 4.28307 4.44404 4.45462 4.49301 4.68255 5.11886 5.17297 5.25242 5.33118 5.35009 5.38020 5.39554 5.57089 5.72290 5.76668 5.84963 5.91401 5.94416 5.99632 6.07843 6.08287 6.14245 6.21038 6.35649 6.38234 6.77719 6.84761 7.18574 7.45878 7.71586 7.73943 7.88320 8.04565 8.47982 9.08921 9.65615 11.15417 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.071462 B = 0.004234 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.723371 B = 6611.276902 C = 6692.631457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.085 3.915 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.105 4.105 17 H 0.093 0.907 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.088 4.088 21 H 0.103 0.897 22 C -0.123 4.123 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.337 0.663 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -19.706 1.575 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.313 5.313 13 C -0.026 4.026 14 H 0.094 0.906 15 C -0.189 4.189 16 C -0.123 4.123 17 H 0.111 0.889 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.107 4.107 21 H 0.121 0.879 22 C -0.160 4.160 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.532 -19.553 0.878 19.889 hybrid contribution -0.048 0.943 0.990 1.368 sum 3.484 -18.610 1.868 19.025 Atomic orbital electron populations 1.69954 1.06065 1.26642 1.51023 1.25027 0.94841 0.99233 0.95396 0.86658 0.79573 0.83142 0.78621 1.20210 1.21320 1.20281 1.21231 0.93023 0.91098 1.50378 0.92733 1.19063 0.94031 0.91401 0.97065 1.21623 0.99159 0.93094 1.00626 1.22138 0.94190 0.90877 0.99706 1.60599 1.19892 1.01136 1.49711 1.22732 0.96390 0.89332 0.94135 0.90574 1.23423 1.00180 0.97174 0.98098 1.23581 0.95683 0.95221 0.97855 0.88889 1.22668 0.99686 0.98348 0.95128 1.22619 0.99531 0.97572 0.96417 1.23568 0.95755 0.93707 0.97650 0.87935 1.23543 0.96363 1.00498 0.95627 0.93004 0.96605 0.96868 0.93764 0.92603 0.91644 0.95924 0.84507 0.91753 0.91854 0.92009 0.92186 0.91856 0.91950 0.91651 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.06 5.54 -3.82 -0.02 1.04 16 12 N -0.68 -10.28 6.33 -104.21 -0.66 -10.94 16 13 C 0.08 1.08 2.56 -65.32 -0.17 0.91 16 14 H 0.08 1.03 7.51 -51.93 -0.39 0.64 16 15 C -0.15 -1.72 5.87 -24.34 -0.14 -1.86 16 16 C -0.10 -1.02 5.20 -85.21 -0.44 -1.46 16 17 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.12 -1.09 6.23 -24.19 -0.15 -1.24 16 19 C -0.12 -1.18 6.20 -24.33 -0.15 -1.33 16 20 C -0.09 -0.97 4.87 -85.35 -0.42 -1.39 16 21 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.12 -1.23 6.42 -22.45 -0.14 -1.38 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 4.84 7.87 -39.29 -0.31 4.53 16 31 H 0.06 0.78 7.59 -51.93 -0.39 0.39 16 32 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.06 0.56 7.85 -51.93 -0.41 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 LS Contribution 298.22 15.07 4.49 4.49 Total: -1.00 -29.84 298.22 -9.69 -39.53 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.91 Total: -0.79 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.33 Total: -22.55 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.08 Total: -37.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.84 -9.69 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227003526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.419 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds