Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99449 * 2 1 4 4 H 1.48506 * 109.46968 * 239.99727 * 3 2 1 5 5 H 1.48491 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46813 * 120.00508 * 3 2 1 7 7 C 1.37869 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47051 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47052 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99742 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.35842 * 32.67780 * 13 12 11 15 15 C 1.54575 * 110.40550 * 270.22221 * 13 12 11 16 16 C 1.55928 * 104.64645 * 241.20857 * 15 13 12 17 17 H 1.08995 * 115.92073 * 160.83829 * 16 15 13 18 18 C 1.56190 * 104.55732 * 289.71924 * 16 15 13 19 19 C 1.54581 * 104.51852 * 70.20619 * 18 16 15 20 20 C 1.55923 * 110.39852 * 154.99924 * 13 12 11 21 21 H 1.09001 * 115.92544 * 317.95468 * 20 13 12 22 22 C 1.56948 * 100.64670 * 33.78015 * 16 15 13 23 23 H 0.96992 * 120.00685 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46897 * 60.00694 * 9 7 2 25 25 H 1.08993 * 109.46990 * 300.00324 * 9 7 2 26 26 H 1.08995 * 109.47290 * 59.99903 * 10 9 7 27 27 H 1.09001 * 109.47097 * 300.00116 * 10 9 7 28 28 H 1.08996 * 109.47069 * 59.99757 * 11 10 9 29 29 H 1.09001 * 109.46857 * 299.99764 * 11 10 9 30 30 H 1.00904 * 111.00041 * 56.04593 * 12 11 10 31 31 H 1.09003 * 110.40384 * 0.02562 * 15 13 12 32 32 H 1.09004 * 110.39964 * 122.42005 * 15 13 12 33 33 H 1.09004 * 110.44228 * 311.46364 * 18 16 15 34 34 H 1.09004 * 110.48652 * 188.96913 * 18 16 15 35 35 H 1.09002 * 110.40287 * 241.23434 * 19 18 16 36 36 H 1.08998 * 110.40286 * 118.93181 * 19 18 16 37 37 H 1.09001 * 112.02654 * 189.68975 * 22 16 15 38 38 H 1.09002 * 112.03026 * 63.17153 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4353 -6.1035 -0.0018 13 6 1.7351 -7.3949 -0.0018 14 1 0.7980 -7.3181 -0.5532 15 6 1.4738 -7.8663 1.4469 16 6 2.2455 -9.2159 1.5676 17 1 2.4617 -9.5520 2.5817 18 6 1.4366 -10.2118 0.6770 19 6 1.6983 -9.7374 -0.7707 20 6 2.6401 -8.5039 -0.6201 21 1 3.2000 -8.2202 -1.5113 22 6 3.4770 -8.9299 0.6376 23 1 -0.4851 0.8399 0.0004 24 1 0.6243 -2.5567 -0.8904 25 1 0.6248 -2.5570 0.8896 26 1 2.8722 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8543 -5.0446 -0.8913 29 1 0.8537 -5.0451 0.8886 30 1 3.0702 -6.0368 0.7796 31 1 1.8645 -7.1397 2.1593 32 1 0.4073 -8.0227 1.6091 33 1 0.3733 -10.1532 0.9098 34 1 1.8011 -11.2297 0.8152 35 1 0.7637 -9.4456 -1.2498 36 1 2.1897 -10.5228 -1.3450 37 1 4.0661 -9.8279 0.4516 38 1 4.0930 -8.1133 1.0143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227003526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = -40.301479 kcal Electronic energy + Delta-G solvation = -15197.425983 eV Core-core repulsion = 12844.565225 eV Total energy + Delta-G solvation = -2352.860758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19942 -37.22775 -35.25597 -33.02944 -30.52479 -29.69310 -28.46212 -27.13968 -24.31994 -22.49215 -21.98955 -20.70153 -19.68752 -18.49255 -17.21823 -16.66449 -16.37392 -16.13867 -15.92790 -14.96124 -14.54604 -14.23104 -13.74691 -13.46191 -13.42199 -12.92699 -12.64355 -12.49213 -12.37307 -12.18820 -12.15077 -11.94052 -11.82612 -11.65808 -11.52765 -11.43217 -11.29539 -11.21673 -10.78147 -10.55660 -9.27404 -8.20498 -6.32108 1.39737 1.43341 1.51334 2.40915 3.12355 3.20689 3.59398 3.62510 3.72661 4.19790 4.23508 4.33339 4.42377 4.42670 4.48543 4.51063 4.57857 4.70065 4.73811 4.91299 4.95202 4.97733 5.05037 5.13428 5.17187 5.21091 5.27798 5.28692 5.32811 5.40604 5.50695 5.54518 5.73529 5.84525 6.13243 6.27408 6.52875 6.84509 7.37261 8.91373 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.071462 B = 0.004234 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.723371 B = 6611.276902 C = 6692.631457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.683 5.683 13 C 0.080 3.920 14 H 0.064 0.936 15 C -0.149 4.149 16 C -0.099 4.099 17 H 0.108 0.892 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.090 4.090 21 H 0.096 0.904 22 C -0.119 4.119 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.342 0.658 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 -20.611 1.911 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.313 5.313 13 C -0.030 4.030 14 H 0.082 0.918 15 C -0.188 4.188 16 C -0.117 4.117 17 H 0.126 0.874 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.109 4.109 21 H 0.114 0.886 22 C -0.157 4.157 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.860 -20.483 1.216 21.086 hybrid contribution -0.492 1.199 0.872 1.562 sum 4.368 -19.284 2.088 19.882 Atomic orbital electron populations 1.70092 1.07860 1.27887 1.51646 1.26011 0.95794 1.03462 0.94622 0.85474 0.78263 0.77909 0.79245 1.19137 1.20711 1.19082 1.21675 0.93559 0.92399 1.50683 0.92202 1.18972 0.94429 0.93206 0.94650 1.21375 0.97993 0.92951 1.00658 1.21822 0.94058 0.90451 0.99196 1.60553 1.19411 1.01243 1.50108 1.22830 0.96239 0.88631 0.95283 0.91771 1.23381 1.00473 0.98239 0.96733 1.23612 0.95168 0.94168 0.98749 0.87442 1.22668 0.99655 0.98940 0.94313 1.22612 0.99001 0.97137 0.97142 1.23551 0.95976 0.93493 0.97834 0.88622 1.23533 0.96383 1.00877 0.94881 0.92732 0.99142 0.99187 0.93161 0.92914 0.92432 0.96273 0.83908 0.92563 0.91942 0.92057 0.90576 0.92394 0.90580 0.90142 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.44 0.28 -57.85 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.38 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.97 5.41 30.60 0.17 -3.80 16 11 C 0.07 2.68 5.54 86.30 0.48 3.16 16 12 N -0.68 -20.28 6.33 -483.62 -3.06 -23.34 16 13 C 0.08 2.00 2.56 46.46 0.12 2.12 16 14 H 0.06 1.75 7.51 -2.39 -0.02 1.73 16 15 C -0.15 -3.26 5.87 32.14 0.19 -3.08 16 16 C -0.10 -1.69 5.20 -7.29 -0.04 -1.73 16 17 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 18 C -0.12 -1.84 6.23 32.24 0.20 -1.64 16 19 C -0.12 -2.08 6.20 32.15 0.20 -1.88 16 20 C -0.09 -1.85 4.87 -7.38 -0.04 -1.89 16 21 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 22 C -0.12 -2.14 6.42 33.37 0.21 -1.92 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.34 9.57 7.87 -89.69 -0.71 8.87 16 31 H 0.06 1.32 7.59 -2.39 -0.02 1.30 16 32 H 0.06 1.37 7.84 -2.38 -0.02 1.35 16 33 H 0.06 0.97 7.85 -2.39 -0.02 0.96 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.05 7.84 -2.39 -0.02 1.04 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.22 7.87 -2.39 -0.02 1.21 16 Total: -1.00 -63.71 298.22 1.89 -61.82 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.30 Total: 12.86 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 2.34 Total: -40.56 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.77 Total: -81.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.71 1.89 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227003526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.520 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds