Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34949 * 126.03106 * 2 1 4 4 C 1.35321 * 107.73921 * 179.75119 * 3 2 1 5 5 C 1.39865 * 107.92358 * 0.39619 * 4 3 2 6 6 C 1.50699 * 125.89908 * 179.86362 * 5 4 3 7 7 C 1.53006 * 109.46866 * 124.71503 * 6 5 4 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99800 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46861 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00407 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99561 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00353 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99803 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46966 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47145 * 119.99779 * 15 13 11 18 18 H 1.48492 * 109.47159 * 239.99932 * 15 13 11 19 19 N 1.30842 * 108.20084 * 359.59889 * 5 4 3 20 20 H 1.08990 * 109.47117 * 269.96877 * 1 2 3 21 21 H 1.09000 * 109.47175 * 29.97755 * 1 2 3 22 22 H 1.09002 * 109.46434 * 149.97247 * 1 2 3 23 23 H 1.07999 * 126.12879 * 359.97438 * 3 2 1 24 24 H 1.08002 * 126.03287 * 180.27841 * 4 3 2 25 25 H 1.09000 * 109.47247 * 4.71671 * 6 5 4 26 26 H 1.09001 * 109.47358 * 244.71098 * 6 5 4 27 27 H 1.08993 * 109.46955 * 300.00219 * 7 6 5 28 28 H 1.09000 * 109.47050 * 60.00048 * 7 6 5 29 29 H 1.00898 * 110.99915 * 56.05185 * 8 7 6 30 30 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 31 31 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 32 32 H 1.08997 * 109.46649 * 299.99858 * 10 9 8 33 33 H 1.09001 * 109.47170 * 60.00230 * 10 9 8 34 34 H 0.96997 * 120.00566 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0056 5 6 3.5347 -0.7320 -0.0001 6 6 4.7498 -1.6234 0.0004 7 6 4.6711 -2.5922 1.1820 8 7 5.8552 -3.4616 1.1820 9 6 5.8137 -4.4077 2.3051 10 6 7.0607 -5.2936 2.2721 11 6 7.0177 -6.2645 3.4238 12 1 6.1845 -6.2508 4.1108 13 6 8.0426 -7.1696 3.6010 14 7 9.0574 -7.1860 2.7647 15 14 7.9890 -8.3737 5.0282 16 1 6.7496 -8.1529 5.8158 17 1 8.0010 -9.7632 4.5044 18 1 9.1734 -8.1626 5.8987 19 7 2.2892 -1.1327 0.0000 20 1 -0.3633 -0.0006 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3632 -0.8898 -0.5143 23 1 1.9280 2.1194 -0.0004 24 1 4.4210 1.2965 0.0113 25 1 5.6483 -1.0130 0.0903 26 1 4.7862 -2.1886 -0.9310 27 1 4.6346 -2.0272 2.1133 28 1 3.7726 -3.2027 1.0921 29 1 6.7040 -2.9164 1.1994 30 1 5.7854 -3.8556 3.2445 31 1 4.9229 -5.0305 2.2227 32 1 7.0893 -5.8457 1.3327 33 1 7.9513 -4.6705 2.3547 34 1 9.7782 -7.8229 2.8892 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227230050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = 63.599186 kcal Electronic energy + Delta-G solvation = -14213.223106 eV Core-core repulsion = 11761.327475 eV Total energy + Delta-G solvation = -2451.895631 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.22573 -36.35236 -34.08434 -32.85139 -31.02472 -30.01077 -28.39965 -26.04404 -23.97129 -22.06721 -21.14448 -20.55417 -19.43472 -17.06559 -16.25070 -15.75237 -15.29513 -14.55071 -14.37487 -14.01376 -13.88151 -13.34511 -13.02409 -12.73897 -12.70882 -12.33624 -11.81076 -11.58313 -11.24018 -10.92748 -10.88521 -10.49374 -10.41864 -9.91496 -9.39790 -9.20957 -9.06795 -8.64524 -8.30569 -7.73129 -5.94940 -3.97066 1.79274 2.40930 2.74411 3.34780 3.41851 3.46428 4.33531 4.47414 4.59153 4.75598 4.88614 5.07617 5.15107 5.25790 5.41008 5.53083 5.58478 5.74166 5.84200 5.88891 6.24962 6.32058 6.42358 6.53372 6.63561 6.89202 7.05757 7.55222 7.68260 7.79826 7.90073 8.04869 8.15420 8.49934 9.10546 9.66410 11.16624 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.064156 B = 0.003732 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.329934 B = 7500.454936 C = 7783.890989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.383 5.383 3 C 0.048 3.952 4 C -0.270 4.270 5 C 0.084 3.916 6 C -0.038 4.038 7 C 0.067 3.933 8 N -0.692 5.692 9 C 0.066 3.934 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.291 5.291 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.171 0.829 24 H 0.147 0.853 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.335 0.665 30 H 0.014 0.986 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 17.787 -6.024 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.165 5.165 3 C -0.098 4.098 4 C -0.299 4.299 5 C -0.084 4.084 6 C -0.077 4.077 7 C -0.064 4.064 8 N -0.323 5.323 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 N -0.113 5.113 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.189 0.811 24 H 0.165 0.835 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.397 16.254 -6.503 23.314 hybrid contribution 0.644 0.765 1.559 1.852 sum -14.754 17.019 -4.944 23.060 Atomic orbital electron populations 1.21814 0.74492 1.04299 1.03260 1.48549 1.06560 1.03955 1.57403 1.22498 0.91303 0.93361 1.02610 1.21459 0.96998 0.94546 1.16923 1.22402 0.93432 0.93938 0.98582 1.20049 0.91589 0.95345 1.00763 1.21837 0.95470 0.93864 0.95204 1.60584 1.03687 1.20103 1.47937 1.22148 1.01777 0.93572 0.88679 1.19081 0.90968 0.93753 0.97501 1.21236 1.06007 1.17065 1.11596 0.92720 1.25006 0.95506 0.97505 0.96408 1.69978 1.09781 1.36786 1.36755 0.86534 0.77893 0.81078 0.82478 1.19782 1.20987 1.21056 1.77395 1.01450 1.07393 1.25082 0.90889 0.89698 0.89323 0.81147 0.83543 0.90118 0.89271 0.96023 0.90911 0.84776 0.96733 0.92370 0.95587 0.96764 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.85 0.69 1.36 16 2 N -0.38 -4.29 4.01 -68.16 -0.27 -4.56 16 3 C 0.05 0.46 11.49 -17.22 -0.20 0.27 16 4 C -0.27 -3.08 10.72 -40.01 -0.43 -3.50 16 5 C 0.08 1.16 6.49 -82.41 -0.53 0.62 16 6 C -0.04 -0.52 6.05 -27.88 -0.17 -0.69 16 7 C 0.07 1.09 5.64 -3.82 -0.02 1.07 16 8 N -0.69 -13.12 6.50 -113.77 -0.74 -13.86 16 9 C 0.07 1.49 5.62 -3.82 -0.02 1.46 16 10 C 0.02 0.66 5.23 -27.89 -0.15 0.51 16 11 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.46 13.28 55.43 0.74 -26.72 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 N -0.29 -4.29 12.54 33.67 0.42 -3.87 16 20 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 24 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.34 5.94 8.73 -39.29 -0.34 5.59 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -34.00 294.94 -7.05 -41.06 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.38 Total: -0.73 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.24 Total: -12.86 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.15 Total: -49.01 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.00 -7.05 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227230050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.657 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds