Wall clock time and date at job start Mon Mar 30 2020 02:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34949 * 126.03106 * 2 1 4 4 C 1.35321 * 107.73921 * 179.75119 * 3 2 1 5 5 C 1.39865 * 107.92358 * 0.39619 * 4 3 2 6 6 C 1.50699 * 125.89908 * 179.86362 * 5 4 3 7 7 C 1.53006 * 109.46866 * 124.71503 * 6 5 4 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99800 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46861 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00407 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99561 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00353 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99803 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46966 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47145 * 119.99779 * 15 13 11 18 18 H 1.48492 * 109.47159 * 239.99932 * 15 13 11 19 19 N 1.30842 * 108.20084 * 359.59889 * 5 4 3 20 20 H 1.08990 * 109.47117 * 269.96877 * 1 2 3 21 21 H 1.09000 * 109.47175 * 29.97755 * 1 2 3 22 22 H 1.09002 * 109.46434 * 149.97247 * 1 2 3 23 23 H 1.07999 * 126.12879 * 359.97438 * 3 2 1 24 24 H 1.08002 * 126.03287 * 180.27841 * 4 3 2 25 25 H 1.09000 * 109.47247 * 4.71671 * 6 5 4 26 26 H 1.09001 * 109.47358 * 244.71098 * 6 5 4 27 27 H 1.08993 * 109.46955 * 300.00219 * 7 6 5 28 28 H 1.09000 * 109.47050 * 60.00048 * 7 6 5 29 29 H 1.00898 * 110.99915 * 56.05185 * 8 7 6 30 30 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 31 31 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 32 32 H 1.08997 * 109.46649 * 299.99858 * 10 9 8 33 33 H 1.09001 * 109.47170 * 60.00230 * 10 9 8 34 34 H 0.96997 * 120.00566 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0056 5 6 3.5347 -0.7320 -0.0001 6 6 4.7498 -1.6234 0.0004 7 6 4.6711 -2.5922 1.1820 8 7 5.8552 -3.4616 1.1820 9 6 5.8137 -4.4077 2.3051 10 6 7.0607 -5.2936 2.2721 11 6 7.0177 -6.2645 3.4238 12 1 6.1845 -6.2508 4.1108 13 6 8.0426 -7.1696 3.6010 14 7 9.0574 -7.1860 2.7647 15 14 7.9890 -8.3737 5.0282 16 1 6.7496 -8.1529 5.8158 17 1 8.0010 -9.7632 4.5044 18 1 9.1734 -8.1626 5.8987 19 7 2.2892 -1.1327 0.0000 20 1 -0.3633 -0.0006 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3632 -0.8898 -0.5143 23 1 1.9280 2.1194 -0.0004 24 1 4.4210 1.2965 0.0113 25 1 5.6483 -1.0130 0.0903 26 1 4.7862 -2.1886 -0.9310 27 1 4.6346 -2.0272 2.1133 28 1 3.7726 -3.2027 1.0921 29 1 6.7040 -2.9164 1.1994 30 1 5.7854 -3.8556 3.2445 31 1 4.9229 -5.0305 2.2227 32 1 7.0893 -5.8457 1.3327 33 1 7.9513 -4.6705 2.3547 34 1 9.7782 -7.8229 2.8892 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227230050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:48 Heat of formation + Delta-G solvation = 39.620260 kcal Electronic energy + Delta-G solvation = -14214.262910 eV Core-core repulsion = 11761.327475 eV Total energy + Delta-G solvation = -2452.935435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06269 -37.89004 -35.53003 -34.52055 -32.42777 -30.98761 -29.94906 -27.14357 -25.74681 -23.38234 -22.50538 -21.94484 -20.43359 -18.51538 -17.80263 -17.07839 -16.49576 -16.26116 -15.68228 -15.25550 -14.92468 -14.70857 -14.30193 -14.10749 -13.74199 -13.41007 -13.15153 -13.02414 -12.93909 -12.72581 -12.37420 -12.27070 -11.88761 -11.48842 -11.37704 -11.20587 -10.56739 -10.17578 -9.45930 -9.32441 -8.20196 -6.31796 0.98347 1.40436 1.41361 1.54768 1.72600 1.84590 2.40994 3.12941 3.30108 3.67788 3.97491 4.16580 4.25276 4.29494 4.44315 4.55842 4.58669 4.60419 4.69542 4.75922 4.88146 5.00280 5.05214 5.08488 5.25333 5.44350 5.66796 5.72354 5.78020 6.11764 6.22252 6.25608 6.56718 6.80380 6.85115 7.37270 8.92267 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.064156 B = 0.003732 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.329934 B = 7500.454936 C = 7783.890989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 C 0.062 3.938 4 C -0.290 4.290 5 C 0.063 3.937 6 C -0.029 4.029 7 C 0.076 3.924 8 N -0.696 5.696 9 C 0.083 3.917 10 C 0.032 3.968 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.969 3.031 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.275 1.275 19 N -0.341 5.341 20 H 0.082 0.918 21 H 0.121 0.879 22 H 0.082 0.918 23 H 0.217 0.783 24 H 0.164 0.836 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.344 0.656 30 H 0.018 0.982 31 H 0.052 0.948 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.443 19.205 -5.359 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.169 5.169 3 C -0.085 4.085 4 C -0.319 4.319 5 C -0.103 4.103 6 C -0.068 4.068 7 C -0.054 4.054 8 N -0.327 5.327 9 C -0.046 4.046 10 C -0.006 4.006 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.201 1.201 19 N -0.165 5.165 20 H 0.101 0.899 21 H 0.140 0.860 22 H 0.101 0.899 23 H 0.234 0.766 24 H 0.182 0.818 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.546 17.683 -5.846 24.913 hybrid contribution 0.930 0.398 1.300 1.647 sum -15.616 18.081 -4.547 24.320 Atomic orbital electron populations 1.22171 0.72215 1.05888 1.04395 1.48926 1.07962 1.03529 1.56436 1.23213 0.90526 0.94789 0.99939 1.21778 0.98720 0.93607 1.17803 1.22455 0.93087 0.95174 0.99588 1.19918 0.92985 0.94999 0.98897 1.21755 0.93380 0.93599 0.96652 1.60475 1.05186 1.20766 1.46269 1.21780 0.99059 0.93644 0.90077 1.18925 0.92384 0.93715 0.95532 1.21642 1.06462 1.18025 1.12388 0.92342 1.25987 0.94895 0.99456 0.99416 1.70105 1.10534 1.37757 1.38663 0.85346 0.78427 0.78241 0.78687 1.18733 1.20261 1.20088 1.77290 1.02378 1.09915 1.26894 0.89944 0.86038 0.89875 0.76622 0.81805 0.88182 0.90025 0.95904 0.92539 0.83837 0.96363 0.92913 0.98596 0.98576 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.47 127.77 1.47 2.48 16 2 N -0.39 -7.96 4.01 -369.56 -1.48 -9.44 16 3 C 0.06 1.01 11.49 83.54 0.96 1.97 16 4 C -0.29 -6.06 10.72 21.99 0.24 -5.83 16 5 C 0.06 1.70 6.49 43.10 0.28 1.98 16 6 C -0.03 -0.77 6.05 29.85 0.18 -0.59 16 7 C 0.08 2.50 5.64 86.31 0.49 2.98 16 8 N -0.70 -26.64 6.50 -513.86 -3.34 -29.98 16 9 C 0.08 3.79 5.62 86.30 0.49 4.27 16 10 C 0.03 1.78 5.23 29.85 0.16 1.93 16 11 C -0.55 -32.39 9.11 25.60 0.23 -32.15 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.93 -57.90 13.28 21.45 0.28 -57.61 16 15 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 N -0.34 -9.98 12.54 -47.39 -0.59 -10.57 16 20 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 22 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.22 1.33 8.06 -2.91 -0.02 1.30 16 24 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 25 H 0.10 2.26 8.12 -2.39 -0.02 2.24 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.34 12.21 8.73 -89.70 -0.78 11.42 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.27 294.94 2.12 -72.15 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.28 Total: 10.59 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.95 Total: -22.46 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.13 Total: -107.60 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.27 2.12 -72.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227230050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.770 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds