Wall clock time and date at job start Mon Mar 30 2020 02:46:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.40084 * 126.03058 * 2 1
4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1
5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2
6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3
7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1
8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2
9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6
10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7
11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8
12 12 C 1.50699 * 109.47216 * 180.02562 * 11 10 9
13 13 H 1.08002 * 120.00062 * 0.02562 * 12 11 10
14 14 C 1.37874 * 120.00065 * 180.02562 * 12 11 10
15 15 N 1.31519 * 119.99567 * 359.97438 * 14 12 11
16 16 Si 1.86794 * 120.00149 * 180.02562 * 14 12 11
17 17 H 1.48493 * 109.47424 * 59.99674 * 16 14 12
18 18 H 1.48502 * 109.47232 * 179.97438 * 16 14 12
19 19 H 1.48506 * 109.47139 * 299.99221 * 16 14 12
20 20 H 1.08994 * 109.47427 * 269.96961 * 1 2 3
21 21 H 1.08999 * 109.47247 * 29.97548 * 1 2 3
22 22 H 1.09007 * 109.46720 * 149.97509 * 1 2 3
23 23 H 1.08007 * 125.90122 * 180.26287 * 4 3 2
24 24 H 1.08002 * 126.04477 * 179.82088 * 5 4 3
25 25 H 1.09002 * 109.46733 * 25.00405 * 7 6 2
26 26 H 1.08998 * 109.47609 * 145.00695 * 7 6 2
27 27 H 1.09002 * 109.46948 * 299.99502 * 8 7 6
28 28 H 1.08995 * 109.47549 * 59.99195 * 8 7 6
29 29 H 1.00894 * 111.00031 * 303.95049 * 9 8 7
30 30 H 1.09001 * 109.47373 * 299.99945 * 10 9 8
31 31 H 1.09002 * 109.47013 * 60.00456 * 10 9 8
32 32 H 1.08994 * 109.47442 * 300.00614 * 11 10 9
33 33 H 1.09002 * 109.46499 * 60.00446 * 11 10 9
34 34 H 0.97010 * 119.99577 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2890 1.1329 0.0000
4 6 3.5346 0.7323 0.0057
5 6 3.5438 -0.6663 -0.0009
6 6 2.2589 -1.0911 -0.0005
7 6 1.7975 -2.5257 -0.0006
8 6 1.7614 -3.0500 1.4364
9 7 1.3110 -4.4482 1.4363
10 6 1.2645 -4.9863 2.8024
11 6 0.7915 -6.4409 2.7618
12 6 0.7432 -6.9927 4.1633
13 1 1.0216 -6.3684 4.9994
14 6 0.3437 -8.2947 4.3781
15 7 0.0043 -9.0549 3.3599
16 14 0.2831 -8.9786 6.1153
17 1 -0.6614 -8.1742 6.9313
18 1 -0.1758 -10.3903 6.0759
19 1 1.6380 -8.9148 6.7199
20 1 -0.3634 -0.0005 1.0276
21 1 -0.3634 0.8902 -0.5134
22 1 -0.3633 -0.8898 -0.5143
23 1 4.4053 1.3713 0.0112
24 1 4.4212 -1.2961 -0.0013
25 1 0.7995 -2.5863 -0.4346
26 1 2.4874 -3.1293 -0.5903
27 1 2.7594 -2.9894 1.8704
28 1 1.0715 -2.4464 2.0262
29 1 0.4154 -4.5396 0.9807
30 1 2.2593 -4.9396 3.2454
31 1 0.5716 -4.3961 3.4020
32 1 -0.2033 -6.4873 2.3189
33 1 1.4842 -7.0314 2.1621
34 1 -0.2772 -9.9708 3.5111
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230781772.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:51
Heat of formation + Delta-G solvation = 62.215820 kcal
Electronic energy + Delta-G solvation = -14426.977828 eV
Core-core repulsion = 11975.022210 eV
Total energy + Delta-G solvation = -2451.955618 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.138 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.28912 -36.46724 -33.75505 -33.14273 -32.07825 -29.56879 -27.30345 -26.81828
-24.15451 -22.19246 -21.19598 -20.67139 -19.61791 -16.79116 -16.30555 -15.80314
-15.37949 -14.65355 -14.53170 -14.11141 -13.75094 -13.49582 -13.17681 -12.83293
-12.53440 -12.38085 -12.01470 -11.72666 -11.32934 -10.99753 -10.92368 -10.67251
-10.57069 -10.01422 -9.49445 -9.29203 -9.17610 -8.56502 -8.36838 -7.91144
-6.01437 -4.04233 1.78578 2.42989 2.77661 3.32613 3.36999 3.39405
4.32465 4.44168 4.47563 4.87366 4.95053 5.03023 5.06944 5.23279
5.28226 5.34584 5.51743 5.63541 5.69711 5.85557 6.05083 6.18586
6.29492 6.37855 6.58757 6.92868 6.93775 7.39769 7.63248 7.68662
7.77969 7.90328 8.05153 8.41120 9.02717 9.59675 11.09952
Molecular weight = 223.14amu
Principal moments of inertia in cm(-1)
A = 0.061186 B = 0.003950 C = 0.003920
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.512336 B = 7087.090566 C = 7140.882935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.099 3.901
2 N -0.374 5.374
3 N -0.306 5.306
4 C 0.045 3.955
5 C -0.274 4.274
6 C 0.095 3.905
7 C -0.058 4.058
8 C 0.067 3.933
9 N -0.691 5.691
10 C 0.066 3.934
11 C 0.025 3.975
12 C -0.524 4.524
13 H 0.054 0.946
14 C 0.058 3.942
15 N -0.894 5.894
16 Si 0.893 3.107
17 H -0.277 1.277
18 H -0.287 1.287
19 H -0.276 1.276
20 H 0.074 0.926
21 H 0.087 0.913
22 H 0.088 0.912
23 H 0.182 0.818
24 H 0.148 0.852
25 H 0.072 0.928
26 H 0.100 0.900
27 H 0.074 0.926
28 H 0.021 0.979
29 H 0.335 0.665
30 H 0.059 0.941
31 H 0.015 0.985
32 H 0.014 0.986
33 H 0.026 0.974
34 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.588 16.148 -7.686 18.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.157 5.157
3 N -0.127 5.127
4 C -0.140 4.140
5 C -0.303 4.303
6 C -0.033 4.033
7 C -0.097 4.097
8 C -0.063 4.063
9 N -0.322 5.322
10 C -0.062 4.062
11 C -0.012 4.012
12 C -0.562 4.562
13 H 0.072 0.928
14 C -0.143 4.143
15 N -0.533 5.533
16 Si 0.721 3.279
17 H -0.203 1.203
18 H -0.212 1.212
19 H -0.202 1.202
20 H 0.093 0.907
21 H 0.106 0.894
22 H 0.106 0.894
23 H 0.199 0.801
24 H 0.166 0.834
25 H 0.091 0.909
26 H 0.119 0.881
27 H 0.093 0.907
28 H 0.039 0.961
29 H 0.153 0.847
30 H 0.078 0.922
31 H 0.033 0.967
32 H 0.032 0.968
33 H 0.044 0.956
34 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.206 16.733 -7.856 18.617
hybrid contribution -0.327 -0.637 1.338 1.518
sum 1.879 16.096 -6.517 17.466
Atomic orbital electron populations
1.21850 0.74586 1.04350 1.03501 1.48499 1.06483 1.03505 1.57174
1.77327 1.01921 1.08057 1.25426 1.23817 0.95158 0.95177 0.99886
1.21285 0.96450 0.94937 1.17639 1.21149 0.91331 0.90437 1.00376
1.20308 1.02478 0.87816 0.99095 1.21839 1.01002 0.89606 0.93892
1.60576 1.34447 1.16048 1.21096 1.22170 0.99722 0.98498 0.85792
1.19070 0.96434 0.88678 0.97037 1.21139 1.45145 0.97136 0.92822
0.92804 1.24999 0.95328 0.97035 0.96951 1.69965 1.45186 1.07959
1.30148 0.86639 0.78476 0.77949 0.84818 1.20302 1.21239 1.20176
0.90716 0.89397 0.89394 0.80138 0.83432 0.90935 0.88146 0.90720
0.96092 0.84749 0.92208 0.96663 0.96810 0.95554 0.92906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.85 11.27 59.85 0.67 1.53 16
2 N -0.37 -4.59 4.01 -63.89 -0.26 -4.85 16
3 N -0.31 -4.13 12.58 30.63 0.39 -3.74 16
4 C 0.05 0.52 12.03 -17.36 -0.21 0.32 16
5 C -0.27 -3.24 10.72 -40.01 -0.43 -3.67 16
6 C 0.10 1.16 6.19 -82.27 -0.51 0.65 16
7 C -0.06 -0.65 5.76 -27.88 -0.16 -0.82 16
8 C 0.07 0.93 5.67 -3.82 -0.02 0.91 16
9 N -0.69 -11.77 6.50 -113.78 -0.74 -12.51 16
10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16
11 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16
12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16
13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16
14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16
15 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16
16 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16
17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
22 H 0.09 0.61 6.98 -51.92 -0.36 0.24 16
23 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16
24 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16
25 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16
26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16
27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
28 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16
29 H 0.34 5.36 8.73 -39.29 -0.34 5.02 16
30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 292.38 15.07 4.41 4.41
Total: -1.00 -32.27 292.38 -6.98 -39.25
By element:
Atomic # 1 Polarization: 5.00 SS G_CDS: -5.26 Total: -0.26 kcal
Atomic # 6 Polarization: -11.56 SS G_CDS: -1.23 Total: -12.80 kcal
Atomic # 7 Polarization: -47.30 SS G_CDS: 0.13 Total: -47.17 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -32.27 -6.98 -39.25 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230781772.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.464 kcal
(2) G-P(sol) polarization free energy of solvation -32.268 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.216 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds