Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47216 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99567 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00149 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47424 * 59.99674 * 16 14 12 18 18 H 1.48502 * 109.47232 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47139 * 299.99221 * 16 14 12 20 20 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 21 21 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 22 22 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 23 23 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 24 24 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 25 25 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 26 26 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 27 27 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 28 28 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 29 29 H 1.00894 * 111.00031 * 303.95049 * 9 8 7 30 30 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 31 31 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 32 32 H 1.08994 * 109.47442 * 300.00614 * 11 10 9 33 33 H 1.09002 * 109.46499 * 60.00446 * 11 10 9 34 34 H 0.97010 * 119.99577 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7915 -6.4409 2.7618 12 6 0.7432 -6.9927 4.1633 13 1 1.0216 -6.3684 4.9994 14 6 0.3437 -8.2947 4.3781 15 7 0.0043 -9.0549 3.3599 16 14 0.2831 -8.9786 6.1153 17 1 -0.6614 -8.1742 6.9313 18 1 -0.1758 -10.3903 6.0759 19 1 1.6380 -8.9148 6.7199 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 4.4053 1.3713 0.0112 24 1 4.4212 -1.2961 -0.0013 25 1 0.7995 -2.5863 -0.4346 26 1 2.4874 -3.1293 -0.5903 27 1 2.7594 -2.9894 1.8704 28 1 1.0715 -2.4464 2.0262 29 1 0.4154 -4.5396 0.9807 30 1 2.2593 -4.9396 3.2454 31 1 0.5716 -4.3961 3.4020 32 1 -0.2033 -6.4873 2.3189 33 1 1.4842 -7.0314 2.1621 34 1 -0.2772 -9.9708 3.5111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230781772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = 62.215820 kcal Electronic energy + Delta-G solvation = -14426.977828 eV Core-core repulsion = 11975.022210 eV Total energy + Delta-G solvation = -2451.955618 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.28912 -36.46724 -33.75505 -33.14273 -32.07825 -29.56879 -27.30345 -26.81828 -24.15451 -22.19246 -21.19598 -20.67139 -19.61791 -16.79116 -16.30555 -15.80314 -15.37949 -14.65355 -14.53170 -14.11141 -13.75094 -13.49582 -13.17681 -12.83293 -12.53440 -12.38085 -12.01470 -11.72666 -11.32934 -10.99753 -10.92368 -10.67251 -10.57069 -10.01422 -9.49445 -9.29203 -9.17610 -8.56502 -8.36838 -7.91144 -6.01437 -4.04233 1.78578 2.42989 2.77661 3.32613 3.36999 3.39405 4.32465 4.44168 4.47563 4.87366 4.95053 5.03023 5.06944 5.23279 5.28226 5.34584 5.51743 5.63541 5.69711 5.85557 6.05083 6.18586 6.29492 6.37855 6.58757 6.92868 6.93775 7.39769 7.63248 7.68662 7.77969 7.90328 8.05153 8.41120 9.02717 9.59675 11.09952 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061186 B = 0.003950 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.512336 B = 7087.090566 C = 7140.882935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 N -0.306 5.306 4 C 0.045 3.955 5 C -0.274 4.274 6 C 0.095 3.905 7 C -0.058 4.058 8 C 0.067 3.933 9 N -0.691 5.691 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.074 0.926 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.182 0.818 24 H 0.148 0.852 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.021 0.979 29 H 0.335 0.665 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 16.148 -7.686 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 N -0.127 5.127 4 C -0.140 4.140 5 C -0.303 4.303 6 C -0.033 4.033 7 C -0.097 4.097 8 C -0.063 4.063 9 N -0.322 5.322 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 H 0.093 0.907 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.199 0.801 24 H 0.166 0.834 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.206 16.733 -7.856 18.617 hybrid contribution -0.327 -0.637 1.338 1.518 sum 1.879 16.096 -6.517 17.466 Atomic orbital electron populations 1.21850 0.74586 1.04350 1.03501 1.48499 1.06483 1.03505 1.57174 1.77327 1.01921 1.08057 1.25426 1.23817 0.95158 0.95177 0.99886 1.21285 0.96450 0.94937 1.17639 1.21149 0.91331 0.90437 1.00376 1.20308 1.02478 0.87816 0.99095 1.21839 1.01002 0.89606 0.93892 1.60576 1.34447 1.16048 1.21096 1.22170 0.99722 0.98498 0.85792 1.19070 0.96434 0.88678 0.97037 1.21139 1.45145 0.97136 0.92822 0.92804 1.24999 0.95328 0.97035 0.96951 1.69965 1.45186 1.07959 1.30148 0.86639 0.78476 0.77949 0.84818 1.20302 1.21239 1.20176 0.90716 0.89397 0.89394 0.80138 0.83432 0.90935 0.88146 0.90720 0.96092 0.84749 0.92208 0.96663 0.96810 0.95554 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.27 59.85 0.67 1.53 16 2 N -0.37 -4.59 4.01 -63.89 -0.26 -4.85 16 3 N -0.31 -4.13 12.58 30.63 0.39 -3.74 16 4 C 0.05 0.52 12.03 -17.36 -0.21 0.32 16 5 C -0.27 -3.24 10.72 -40.01 -0.43 -3.67 16 6 C 0.10 1.16 6.19 -82.27 -0.51 0.65 16 7 C -0.06 -0.65 5.76 -27.88 -0.16 -0.82 16 8 C 0.07 0.93 5.67 -3.82 -0.02 0.91 16 9 N -0.69 -11.77 6.50 -113.78 -0.74 -12.51 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.09 0.61 6.98 -51.92 -0.36 0.24 16 23 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 24 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 25 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.34 5.36 8.73 -39.29 -0.34 5.02 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -32.27 292.38 -6.98 -39.25 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.26 Total: -0.26 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.23 Total: -12.80 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.13 Total: -47.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.27 -6.98 -39.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230781772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.464 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds