Wall clock time and date at job start Mon Mar 30 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47216 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99567 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00149 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47424 * 59.99674 * 16 14 12 18 18 H 1.48502 * 109.47232 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47139 * 299.99221 * 16 14 12 20 20 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 21 21 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 22 22 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 23 23 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 24 24 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 25 25 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 26 26 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 27 27 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 28 28 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 29 29 H 1.00894 * 111.00031 * 303.95049 * 9 8 7 30 30 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 31 31 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 32 32 H 1.08994 * 109.47442 * 300.00614 * 11 10 9 33 33 H 1.09002 * 109.46499 * 60.00446 * 11 10 9 34 34 H 0.97010 * 119.99577 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7915 -6.4409 2.7618 12 6 0.7432 -6.9927 4.1633 13 1 1.0216 -6.3684 4.9994 14 6 0.3437 -8.2947 4.3781 15 7 0.0043 -9.0549 3.3599 16 14 0.2831 -8.9786 6.1153 17 1 -0.6614 -8.1742 6.9313 18 1 -0.1758 -10.3903 6.0759 19 1 1.6380 -8.9148 6.7199 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 4.4053 1.3713 0.0112 24 1 4.4212 -1.2961 -0.0013 25 1 0.7995 -2.5863 -0.4346 26 1 2.4874 -3.1293 -0.5903 27 1 2.7594 -2.9894 1.8704 28 1 1.0715 -2.4464 2.0262 29 1 0.4154 -4.5396 0.9807 30 1 2.2593 -4.9396 3.2454 31 1 0.5716 -4.3961 3.4020 32 1 -0.2033 -6.4873 2.3189 33 1 1.4842 -7.0314 2.1621 34 1 -0.2772 -9.9708 3.5111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230781772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:50 Heat of formation + Delta-G solvation = 40.195092 kcal Electronic energy + Delta-G solvation = -14427.932718 eV Core-core repulsion = 11975.022210 eV Total energy + Delta-G solvation = -2452.910509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16465 -37.86789 -35.39180 -34.28945 -33.43094 -31.15111 -28.63680 -27.58205 -25.97810 -23.41948 -22.49340 -22.06069 -20.53757 -18.50945 -17.64302 -17.04975 -16.49550 -16.34361 -15.62356 -15.31215 -14.95625 -14.80940 -14.41252 -14.10707 -13.66954 -13.35688 -13.24838 -13.08884 -12.99224 -12.74806 -12.43263 -12.23398 -11.85484 -11.57447 -11.41458 -11.27735 -10.55059 -10.22499 -9.46723 -9.32788 -8.19789 -6.31160 0.88311 1.41437 1.44276 1.52270 1.64761 1.89634 2.41293 3.13791 3.22306 3.71630 3.90692 3.96938 4.17424 4.34909 4.35539 4.48340 4.56373 4.59170 4.62721 4.73563 4.83803 4.93385 5.04698 5.07391 5.30471 5.44930 5.68120 5.75710 5.78223 6.09666 6.11412 6.25429 6.54288 6.75209 6.85954 7.38130 8.92048 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061186 B = 0.003950 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.512336 B = 7087.090566 C = 7140.882935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.381 5.381 3 N -0.337 5.337 4 C 0.042 3.958 5 C -0.285 4.285 6 C 0.085 3.915 7 C -0.045 4.045 8 C 0.073 3.927 9 N -0.693 5.693 10 C 0.084 3.916 11 C 0.031 3.969 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.209 0.791 24 H 0.160 0.840 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.343 0.657 30 H 0.057 0.943 31 H 0.018 0.982 32 H -0.006 1.006 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 16.792 -7.149 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.164 5.164 3 N -0.159 5.159 4 C -0.143 4.143 5 C -0.314 4.314 6 C -0.043 4.043 7 C -0.084 4.084 8 C -0.056 4.056 9 N -0.325 5.325 10 C -0.045 4.045 11 C -0.007 4.007 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.097 0.903 21 H 0.115 0.885 22 H 0.124 0.876 23 H 0.226 0.774 24 H 0.178 0.822 25 H 0.107 0.893 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.161 0.839 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.320 17.403 -7.328 19.025 hybrid contribution -0.359 -0.808 1.118 1.426 sum 1.961 16.595 -6.209 17.827 Atomic orbital electron populations 1.22120 0.73020 1.05768 1.04206 1.48794 1.07560 1.03168 1.56874 1.77280 1.02871 1.09149 1.26633 1.24335 0.95543 0.95624 0.98809 1.21600 0.96954 0.95391 1.17504 1.21277 0.91709 0.90634 1.00717 1.20162 1.03634 0.87364 0.97266 1.21803 1.00438 0.87608 0.95795 1.60448 1.35040 1.18233 1.18753 1.21773 0.99216 0.95538 0.87979 1.18927 0.94689 0.91556 0.95479 1.21598 1.45187 0.97793 0.94035 0.92265 1.25949 0.94714 0.97417 1.01514 1.70097 1.45959 1.08379 1.32615 0.85498 0.78963 0.77253 0.79310 1.19191 1.20761 1.19218 0.90327 0.88465 0.87607 0.77432 0.82216 0.89264 0.87807 0.91292 0.95912 0.83948 0.92476 0.96374 0.98721 0.98499 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.27 127.77 1.44 2.83 16 2 N -0.38 -8.80 4.01 -356.04 -1.43 -10.23 16 3 N -0.34 -8.71 12.58 -57.02 -0.72 -9.42 16 4 C 0.04 0.91 12.03 85.23 1.02 1.93 16 5 C -0.29 -6.32 10.72 21.99 0.24 -6.08 16 6 C 0.09 1.94 6.19 41.41 0.26 2.19 16 7 C -0.05 -0.94 5.76 29.85 0.17 -0.76 16 8 C 0.07 1.93 5.67 86.31 0.49 2.42 16 9 N -0.69 -22.95 6.50 -513.88 -3.34 -26.29 16 10 C 0.08 3.45 5.62 86.30 0.49 3.94 16 11 C 0.03 1.63 5.23 29.85 0.16 1.78 16 12 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 14 C 0.00 0.13 5.46 84.65 0.46 0.59 16 15 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 16 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 22 H 0.11 1.23 6.98 -2.38 -0.02 1.21 16 23 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 24 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 25 H 0.09 1.56 6.95 -2.39 -0.02 1.54 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.34 10.58 8.73 -89.70 -0.78 9.80 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -68.50 292.38 2.07 -66.43 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.29 Total: 11.70 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.95 Total: -22.05 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -5.20 Total: -102.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.50 2.07 -66.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230781772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.628 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds