Wall clock time and date at job start Mon Mar 30 2020 02:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46975 * 2 1 4 4 C 1.46904 * 110.99845 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.34675 * 125.98512 * 95.00051 * 5 4 3 7 7 N 1.36879 * 106.81522 * 179.97438 * 6 5 4 8 8 C 1.46499 * 126.39849 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47021 * 89.99861 * 8 7 6 10 10 C 1.50702 * 109.47160 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00227 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00193 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99783 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46857 * 90.00350 * 14 12 10 16 16 H 1.48504 * 109.47086 * 210.00099 * 14 12 10 17 17 H 1.48501 * 109.47378 * 330.00253 * 14 12 10 18 18 C 1.35041 * 107.20828 * 0.02562 * 7 6 5 19 19 N 1.30503 * 108.69928 * 359.97438 * 18 7 6 20 20 H 1.08994 * 109.46919 * 59.99969 * 1 2 3 21 21 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46925 * 300.00227 * 1 2 3 23 23 H 1.08997 * 109.47216 * 239.99816 * 2 1 3 24 24 H 1.08998 * 109.46968 * 119.99543 * 2 1 3 25 25 H 1.00903 * 111.00016 * 303.95028 * 3 2 1 26 26 H 1.09002 * 109.47097 * 59.99427 * 4 3 2 27 27 H 1.09000 * 109.46789 * 299.99952 * 4 3 2 28 28 H 1.07999 * 126.59056 * 359.73822 * 6 5 4 29 29 H 1.08996 * 109.47327 * 210.00288 * 8 7 6 30 30 H 1.09002 * 109.46825 * 330.00335 * 8 7 6 31 31 H 1.08996 * 109.47418 * 300.00371 * 9 8 7 32 32 H 1.09002 * 109.46934 * 60.00540 * 9 8 7 33 33 H 0.96998 * 120.00175 * 180.02562 * 13 12 10 34 34 H 1.07997 * 125.65385 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8579 -0.0012 6 6 4.2870 3.5818 1.0840 7 7 4.6484 4.8235 0.6357 8 6 5.0894 5.9512 1.4604 9 6 6.6100 5.9007 1.6223 10 6 7.0635 7.0603 2.4712 11 1 6.3396 7.7629 2.8570 12 6 8.4027 7.2245 2.7553 13 7 8.7985 8.2362 3.4966 14 14 9.6547 6.0090 2.0887 15 1 10.1346 6.4707 0.7613 16 1 10.8031 5.9172 3.0257 17 1 9.0218 4.6729 1.9489 18 6 4.5215 4.8155 -0.7087 19 7 4.1050 3.6365 -1.0826 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6442 1.9013 -0.7814 26 1 3.8647 0.9203 -0.8908 27 1 3.8654 0.9201 0.8892 28 1 4.2695 3.2480 2.1110 29 1 4.8062 6.8867 0.9781 30 1 4.6174 5.8906 2.4410 31 1 6.8931 4.9652 2.1046 32 1 7.0820 5.9613 0.6417 33 1 9.7406 8.3519 3.6961 34 1 4.7308 5.6466 -1.3658 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233513088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:05 Heat of formation + Delta-G solvation = 46.380030 kcal Electronic energy + Delta-G solvation = -14559.012086 eV Core-core repulsion = 12106.369776 eV Total energy + Delta-G solvation = -2452.642310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.64967 -36.61714 -34.75591 -32.70380 -31.33367 -29.95287 -28.63207 -25.58868 -24.27250 -22.12858 -21.56819 -20.32222 -19.74675 -17.33030 -16.25673 -15.66352 -15.32187 -14.68162 -14.36495 -14.04771 -13.93351 -13.74939 -13.15794 -12.89553 -12.63735 -12.32012 -11.77941 -11.71809 -11.64664 -11.26082 -11.21049 -10.68841 -10.39142 -10.00431 -9.62853 -9.46369 -9.01283 -8.72051 -8.45988 -8.00094 -6.22622 -4.24598 2.49494 3.20492 3.28718 3.31473 3.32589 3.39340 4.30054 4.38087 4.85244 4.96769 5.09498 5.10628 5.22941 5.34376 5.36305 5.52488 5.54701 5.66882 5.78406 5.84418 5.89673 6.01060 6.19472 6.20408 6.66703 6.89221 6.94488 7.05607 7.15410 7.37124 7.46966 7.70306 8.27834 8.44785 8.78037 9.37744 10.89807 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.052423 B = 0.004781 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.989932 B = 5854.603415 C = 5946.564115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.151 3.849 5 C -0.019 4.019 6 C -0.028 4.028 7 N -0.446 5.446 8 C 0.111 3.889 9 C -0.022 4.022 10 C -0.530 4.530 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.895 5.895 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.179 3.821 19 N -0.502 5.502 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.344 0.656 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -12.682 -6.222 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.319 5.319 4 C 0.022 3.978 5 C -0.149 4.149 6 C -0.165 4.165 7 N -0.125 5.125 8 C -0.009 4.009 9 C -0.060 4.060 10 C -0.569 4.569 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.707 3.293 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.104 4.104 19 N -0.222 5.222 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.162 0.838 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.186 0.814 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.447 -12.624 -6.161 18.121 hybrid contribution 1.249 -0.381 -0.313 1.342 sum -10.199 -13.005 -6.474 17.750 Atomic orbital electron populations 1.21762 0.95124 1.01436 1.02432 1.21916 0.95590 0.89844 1.00319 1.60564 1.07887 1.12929 1.50497 1.19958 0.87007 0.90224 1.00624 1.20273 1.08681 0.96804 0.89149 1.22437 1.07842 0.85882 1.00290 1.45929 1.46659 1.11718 1.08210 1.22182 0.98735 0.85671 0.94348 1.19908 0.89673 0.98704 0.97718 1.20866 0.93831 1.10087 1.32080 0.90565 1.24955 0.98429 0.95160 0.94357 1.69889 1.16425 1.29539 1.37431 0.86781 0.81151 0.82285 0.79132 1.20060 1.21060 1.19077 1.24788 1.04790 0.98012 0.82835 1.70050 1.19581 1.01996 1.30526 0.92906 0.92388 0.91827 0.95560 0.91110 0.83786 0.94401 0.90268 0.81433 0.89309 0.89511 0.95859 0.96261 0.92366 0.78349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.17 37.16 0.38 -0.87 16 2 C 0.05 0.51 6.41 -3.82 -0.02 0.48 16 3 N -0.69 -8.36 6.49 -115.05 -0.75 -9.10 16 4 C 0.15 2.01 6.22 -4.98 -0.03 1.98 16 5 C -0.02 -0.32 6.60 -82.85 -0.55 -0.86 16 6 C -0.03 -0.46 11.49 -16.56 -0.19 -0.65 16 7 N -0.45 -7.69 2.75 -118.58 -0.33 -8.01 16 8 C 0.11 2.02 6.09 -4.04 -0.02 1.99 16 9 C -0.02 -0.49 4.37 -27.88 -0.12 -0.61 16 10 C -0.53 -14.18 9.66 -34.44 -0.33 -14.52 16 11 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 14 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C 0.18 2.98 12.56 -90.37 -1.14 1.84 16 19 N -0.50 -8.79 11.25 -10.88 -0.12 -8.91 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.34 4.32 8.72 -39.29 -0.34 3.98 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.20 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -30.17 290.90 -8.18 -38.35 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.35 Total: 1.83 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.13 Total: -9.25 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.42 Total: -51.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.17 -8.18 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233513088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.726 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds