Wall clock time and date at job start Mon Mar 30 2020 02:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46975 * 2 1 4 4 C 1.46904 * 110.99845 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.34675 * 125.98512 * 95.00051 * 5 4 3 7 7 N 1.36879 * 106.81522 * 179.97438 * 6 5 4 8 8 C 1.46499 * 126.39849 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47021 * 89.99861 * 8 7 6 10 10 C 1.50702 * 109.47160 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00227 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00193 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99783 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46857 * 90.00350 * 14 12 10 16 16 H 1.48504 * 109.47086 * 210.00099 * 14 12 10 17 17 H 1.48501 * 109.47378 * 330.00253 * 14 12 10 18 18 C 1.35041 * 107.20828 * 0.02562 * 7 6 5 19 19 N 1.30503 * 108.69928 * 359.97438 * 18 7 6 20 20 H 1.08994 * 109.46919 * 59.99969 * 1 2 3 21 21 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46925 * 300.00227 * 1 2 3 23 23 H 1.08997 * 109.47216 * 239.99816 * 2 1 3 24 24 H 1.08998 * 109.46968 * 119.99543 * 2 1 3 25 25 H 1.00903 * 111.00016 * 303.95028 * 3 2 1 26 26 H 1.09002 * 109.47097 * 59.99427 * 4 3 2 27 27 H 1.09000 * 109.46789 * 299.99952 * 4 3 2 28 28 H 1.07999 * 126.59056 * 359.73822 * 6 5 4 29 29 H 1.08996 * 109.47327 * 210.00288 * 8 7 6 30 30 H 1.09002 * 109.46825 * 330.00335 * 8 7 6 31 31 H 1.08996 * 109.47418 * 300.00371 * 9 8 7 32 32 H 1.09002 * 109.46934 * 60.00540 * 9 8 7 33 33 H 0.96998 * 120.00175 * 180.02562 * 13 12 10 34 34 H 1.07997 * 125.65385 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8579 -0.0012 6 6 4.2870 3.5818 1.0840 7 7 4.6484 4.8235 0.6357 8 6 5.0894 5.9512 1.4604 9 6 6.6100 5.9007 1.6223 10 6 7.0635 7.0603 2.4712 11 1 6.3396 7.7629 2.8570 12 6 8.4027 7.2245 2.7553 13 7 8.7985 8.2362 3.4966 14 14 9.6547 6.0090 2.0887 15 1 10.1346 6.4707 0.7613 16 1 10.8031 5.9172 3.0257 17 1 9.0218 4.6729 1.9489 18 6 4.5215 4.8155 -0.7087 19 7 4.1050 3.6365 -1.0826 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6442 1.9013 -0.7814 26 1 3.8647 0.9203 -0.8908 27 1 3.8654 0.9201 0.8892 28 1 4.2695 3.2480 2.1110 29 1 4.8062 6.8867 0.9781 30 1 4.6174 5.8906 2.4410 31 1 6.8931 4.9652 2.1046 32 1 7.0820 5.9613 0.6417 33 1 9.7406 8.3519 3.6961 34 1 4.7308 5.6466 -1.3658 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233513088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:04 Heat of formation + Delta-G solvation = 27.823546 kcal Electronic energy + Delta-G solvation = -14559.816755 eV Core-core repulsion = 12106.369776 eV Total energy + Delta-G solvation = -2453.446979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.92775 -37.56952 -36.31242 -34.55227 -32.40182 -31.57260 -29.73536 -27.16528 -25.47022 -23.27885 -22.88896 -21.71584 -20.98617 -19.21836 -17.62058 -16.72399 -16.66401 -16.16291 -15.57554 -15.45002 -15.12264 -14.90984 -14.72291 -14.52440 -13.89083 -13.48536 -13.15454 -13.00289 -12.71986 -12.46269 -12.31652 -12.12438 -11.99584 -11.85575 -11.56022 -10.90874 -10.83419 -10.40483 -9.43971 -9.20033 -8.36167 -6.41943 1.21564 1.31756 1.34662 1.44342 2.01976 2.12522 2.29397 2.99437 3.43157 3.75835 3.92640 4.09581 4.18553 4.32639 4.34620 4.39012 4.48668 4.62184 4.64767 4.73772 4.99101 5.01794 5.10480 5.14353 5.15328 5.35353 5.49164 5.54285 5.82954 6.11189 6.14193 6.36832 6.43136 6.66197 7.17815 7.23844 8.79536 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.052423 B = 0.004781 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.989932 B = 5854.603415 C = 5946.564115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.693 5.693 4 C 0.155 3.845 5 C -0.024 4.024 6 C -0.043 4.043 7 N -0.452 5.452 8 C 0.125 3.875 9 C -0.015 4.015 10 C -0.532 4.532 11 H 0.048 0.952 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.944 3.056 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.257 1.257 18 C 0.173 3.827 19 N -0.522 5.522 20 H 0.051 0.949 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.340 0.660 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.183 0.817 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.269 0.731 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 -14.334 -7.058 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.325 5.325 4 C 0.025 3.975 5 C -0.153 4.153 6 C -0.179 4.179 7 N -0.132 5.132 8 C 0.004 3.996 9 C -0.053 4.053 10 C -0.571 4.571 11 H 0.067 0.933 12 C -0.183 4.183 13 N -0.582 5.582 14 Si 0.768 3.232 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.181 1.181 18 C -0.110 4.110 19 N -0.241 5.241 20 H 0.071 0.929 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.157 0.843 26 H 0.054 0.946 27 H 0.110 0.890 28 H 0.200 0.800 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.862 -14.305 -7.005 19.860 hybrid contribution 1.286 0.142 -0.055 1.295 sum -10.576 -14.163 -7.060 19.034 Atomic orbital electron populations 1.21735 0.94094 1.02457 1.02048 1.21999 0.96421 0.88494 1.00793 1.60584 1.07128 1.14447 1.50345 1.19982 0.87771 0.88588 1.01131 1.20747 1.07957 0.97854 0.88751 1.22812 1.08085 0.85725 1.01255 1.45862 1.47268 1.11696 1.08363 1.21883 0.95826 0.86713 0.95200 1.19760 0.92725 0.96324 0.96535 1.21193 0.93370 1.10664 1.31829 0.93324 1.25827 1.00746 0.96912 0.94804 1.70021 1.17022 1.31723 1.39418 0.85761 0.78600 0.80225 0.78642 1.19235 1.20790 1.18062 1.25372 1.04088 0.98570 0.82925 1.70086 1.20278 1.02579 1.31189 0.92939 0.90678 0.92538 0.95056 0.90567 0.84254 0.94585 0.89036 0.79954 0.88080 0.88971 0.96381 0.96123 0.92227 0.76002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.17 71.98 0.73 -1.41 16 2 C 0.05 0.90 6.41 86.31 0.55 1.45 16 3 N -0.69 -15.75 6.49 -517.92 -3.36 -19.11 16 4 C 0.15 3.84 6.22 85.56 0.53 4.37 16 5 C -0.02 -0.74 6.60 41.39 0.27 -0.47 16 6 C -0.04 -1.35 11.49 83.09 0.95 -0.40 16 7 N -0.45 -14.73 2.75 -529.07 -1.46 -16.18 16 8 C 0.13 4.33 6.09 86.38 0.53 4.86 16 9 C -0.02 -0.66 4.37 29.85 0.13 -0.53 16 10 C -0.53 -28.44 9.66 25.60 0.25 -28.19 16 11 H 0.05 2.80 7.99 -2.91 -0.02 2.77 16 12 C 0.02 0.87 5.47 84.65 0.46 1.33 16 13 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 14 Si 0.94 43.09 27.47 68.60 1.88 44.97 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.22 6.54 99.48 0.65 -10.57 16 18 C 0.17 5.43 12.56 180.26 2.26 7.69 16 19 N -0.52 -17.41 11.25 -188.32 -2.12 -19.52 16 20 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.34 8.11 8.72 -89.69 -0.78 7.33 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.18 4.96 8.06 -2.91 -0.02 4.93 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 32 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 Total: -1.00 -63.31 290.90 2.16 -61.15 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.23 Total: 16.27 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 6.68 Total: -11.29 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -6.64 Total: -111.10 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -63.31 2.16 -61.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233513088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.976 kcal (2) G-P(sol) polarization free energy of solvation -63.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds