Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99870 * 2 1 4 4 C 1.50697 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.34671 * 125.98956 * 95.00081 * 4 3 2 6 6 N 1.36882 * 106.81858 * 179.97438 * 5 4 3 7 7 C 1.46498 * 126.39536 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47366 * 90.00213 * 7 6 5 9 9 C 1.52996 * 109.47192 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.47160 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99652 * 0.02562 * 10 9 8 12 12 C 1.37869 * 119.99895 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99822 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47121 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47221 * 120.00037 * 14 12 10 17 17 H 1.48499 * 109.46987 * 240.00180 * 14 12 10 18 18 C 1.35043 * 107.20667 * 0.02562 * 6 5 4 19 19 N 1.30501 * 108.69817 * 359.76645 * 18 6 5 20 20 H 1.09004 * 109.47031 * 299.99620 * 1 2 3 21 21 H 1.08995 * 109.47111 * 59.99900 * 1 2 3 22 22 H 1.09004 * 109.47067 * 180.02562 * 1 2 3 23 23 H 1.00901 * 111.00067 * 123.95175 * 2 1 3 24 24 H 1.09001 * 109.46798 * 300.00327 * 3 2 1 25 25 H 1.08998 * 109.46961 * 60.00043 * 3 2 1 26 26 H 1.08005 * 126.58936 * 359.94276 * 5 4 3 27 27 H 1.09008 * 109.46803 * 209.99965 * 7 6 5 28 28 H 1.08999 * 109.47430 * 329.99843 * 7 6 5 29 29 H 1.08999 * 109.46862 * 299.99897 * 8 7 6 30 30 H 1.08999 * 109.47148 * 59.99457 * 8 7 6 31 31 H 1.08999 * 109.47448 * 299.99924 * 9 8 7 32 32 H 1.09005 * 109.47176 * 60.00338 * 9 8 7 33 33 H 0.97000 * 119.99553 * 179.97438 * 13 12 10 34 34 H 1.07988 * 125.65248 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.2951 1.4053 -1.0865 6 7 5.5867 1.3322 -0.6392 7 6 6.7961 1.3730 -1.4648 8 6 7.2549 2.8237 -1.6261 9 6 8.5183 2.8662 -2.4878 10 6 8.9699 4.2952 -2.6472 11 1 8.4117 5.0931 -2.1801 12 6 10.0955 4.5838 -3.3892 13 7 10.7749 3.6122 -3.9584 14 14 10.6555 6.3550 -3.5861 15 1 9.7261 7.2524 -2.8539 16 1 12.0262 6.5050 -3.0348 17 1 10.6591 6.7158 -5.0266 18 6 5.5378 1.2154 0.7053 19 7 4.2879 1.2202 1.0805 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8306 -0.5261 0.7814 24 1 1.6459 1.8948 -0.8900 25 1 1.6459 1.8948 0.8900 26 1 3.9738 1.5031 -2.1130 27 1 7.5844 0.7941 -0.9834 28 1 6.5811 0.9488 -2.4456 29 1 6.4667 3.4026 -2.1074 30 1 7.4699 3.2479 -0.6453 31 1 9.3064 2.2874 -2.0061 32 1 8.3036 2.4420 -3.4687 33 1 11.5666 3.8154 -4.4807 34 1 6.3916 1.1350 1.3616 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234390880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = 43.574919 kcal Electronic energy + Delta-G solvation = -14429.534949 eV Core-core repulsion = 11976.771000 eV Total energy + Delta-G solvation = -2452.763948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.81590 -36.29753 -35.10597 -33.06695 -30.99884 -30.06630 -27.37415 -26.09921 -23.70785 -23.30189 -21.01575 -20.35755 -19.96440 -17.08171 -16.24461 -15.66404 -15.18703 -14.58808 -14.53478 -14.28876 -14.15847 -13.69638 -13.44063 -12.52578 -12.21623 -12.11532 -11.97946 -11.79737 -11.65293 -11.01671 -10.95709 -10.66100 -9.98762 -9.86451 -9.67559 -9.35076 -9.04212 -8.57038 -8.46466 -8.14337 -6.11098 -4.14199 2.32664 3.12266 3.23539 3.25128 3.33117 3.37485 4.37935 4.39040 4.76219 4.97708 5.14612 5.16838 5.25503 5.28936 5.36797 5.47274 5.53783 5.66137 5.70872 5.76274 6.06130 6.22765 6.50630 6.62405 6.81525 6.83105 6.98673 7.26759 7.47866 7.49922 7.60029 7.86707 8.27918 8.30235 8.92180 9.51033 11.00142 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.059387 B = 0.004158 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.367215 B = 6732.312394 C = 6839.214512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.149 3.851 4 C -0.016 4.016 5 C -0.029 4.029 6 N -0.447 5.447 7 C 0.099 3.901 8 C -0.123 4.123 9 C 0.024 3.976 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.181 3.819 19 N -0.500 5.500 20 H 0.020 0.980 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.345 0.655 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.170 0.830 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -6.189 6.197 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C 0.019 3.981 4 C -0.145 4.145 5 C -0.165 4.165 6 N -0.128 5.128 7 C -0.023 4.023 8 C -0.161 4.161 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.102 4.102 19 N -0.219 5.219 20 H 0.038 0.962 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.163 0.837 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.187 0.813 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.070 -6.346 6.120 16.604 hybrid contribution 0.664 1.304 -0.147 1.471 sum -13.406 -5.042 5.973 15.519 Atomic orbital electron populations 1.22190 0.88041 1.01701 1.00294 1.60454 1.07142 1.14264 1.50425 1.20022 0.87728 0.89513 1.00806 1.20307 0.95163 1.10003 0.89065 1.22451 0.83241 1.10393 1.00377 1.45796 1.07251 1.51553 1.08161 1.22303 0.83734 1.01229 0.94986 1.22045 1.00738 0.91662 1.01656 1.19060 0.90371 0.97647 0.94294 1.21212 1.10464 0.92628 1.31813 0.92572 1.25018 0.96509 0.97352 0.95500 1.69963 1.18105 1.31506 1.33774 0.86511 0.78611 0.84866 0.77901 1.19699 1.20904 1.20914 1.24827 0.96748 1.05986 0.82628 1.70074 1.00709 1.20614 1.30511 0.96161 0.91733 0.91578 0.83725 0.90146 0.94241 0.81285 0.89094 0.89318 0.92575 0.92522 0.96233 0.96268 0.92904 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.88 16 2 N -0.69 -7.90 6.84 -122.42 -0.84 -8.74 16 3 C 0.15 1.83 6.22 -4.97 -0.03 1.80 16 4 C -0.02 -0.24 6.60 -82.85 -0.55 -0.79 16 5 C -0.03 -0.42 11.49 -16.56 -0.19 -0.61 16 6 N -0.45 -6.76 2.75 -118.58 -0.33 -7.09 16 7 C 0.10 1.51 6.15 -4.04 -0.02 1.48 16 8 C -0.12 -2.34 5.48 -26.73 -0.15 -2.48 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.18 2.70 12.56 -90.37 -1.14 1.57 16 19 N -0.50 -8.07 11.25 -10.88 -0.12 -8.20 16 20 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.35 4.01 8.81 -39.29 -0.35 3.66 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 27 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -30.61 294.27 -8.50 -39.11 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.38 Total: 0.47 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.98 Total: -10.86 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.55 Total: -49.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.61 -8.50 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234390880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.685 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds