Wall clock time and date at job start Mon Mar 30 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99870 * 2 1 4 4 C 1.50697 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.34671 * 125.98956 * 95.00081 * 4 3 2 6 6 N 1.36882 * 106.81858 * 179.97438 * 5 4 3 7 7 C 1.46498 * 126.39536 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47366 * 90.00213 * 7 6 5 9 9 C 1.52996 * 109.47192 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.47160 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99652 * 0.02562 * 10 9 8 12 12 C 1.37869 * 119.99895 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99822 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47121 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47221 * 120.00037 * 14 12 10 17 17 H 1.48499 * 109.46987 * 240.00180 * 14 12 10 18 18 C 1.35043 * 107.20667 * 0.02562 * 6 5 4 19 19 N 1.30501 * 108.69817 * 359.76645 * 18 6 5 20 20 H 1.09004 * 109.47031 * 299.99620 * 1 2 3 21 21 H 1.08995 * 109.47111 * 59.99900 * 1 2 3 22 22 H 1.09004 * 109.47067 * 180.02562 * 1 2 3 23 23 H 1.00901 * 111.00067 * 123.95175 * 2 1 3 24 24 H 1.09001 * 109.46798 * 300.00327 * 3 2 1 25 25 H 1.08998 * 109.46961 * 60.00043 * 3 2 1 26 26 H 1.08005 * 126.58936 * 359.94276 * 5 4 3 27 27 H 1.09008 * 109.46803 * 209.99965 * 7 6 5 28 28 H 1.08999 * 109.47430 * 329.99843 * 7 6 5 29 29 H 1.08999 * 109.46862 * 299.99897 * 8 7 6 30 30 H 1.08999 * 109.47148 * 59.99457 * 8 7 6 31 31 H 1.08999 * 109.47448 * 299.99924 * 9 8 7 32 32 H 1.09005 * 109.47176 * 60.00338 * 9 8 7 33 33 H 0.97000 * 119.99553 * 179.97438 * 13 12 10 34 34 H 1.07988 * 125.65248 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.2951 1.4053 -1.0865 6 7 5.5867 1.3322 -0.6392 7 6 6.7961 1.3730 -1.4648 8 6 7.2549 2.8237 -1.6261 9 6 8.5183 2.8662 -2.4878 10 6 8.9699 4.2952 -2.6472 11 1 8.4117 5.0931 -2.1801 12 6 10.0955 4.5838 -3.3892 13 7 10.7749 3.6122 -3.9584 14 14 10.6555 6.3550 -3.5861 15 1 9.7261 7.2524 -2.8539 16 1 12.0262 6.5050 -3.0348 17 1 10.6591 6.7158 -5.0266 18 6 5.5378 1.2154 0.7053 19 7 4.2879 1.2202 1.0805 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8306 -0.5261 0.7814 24 1 1.6459 1.8948 -0.8900 25 1 1.6459 1.8948 0.8900 26 1 3.9738 1.5031 -2.1130 27 1 7.5844 0.7941 -0.9834 28 1 6.5811 0.9488 -2.4456 29 1 6.4667 3.4026 -2.1074 30 1 7.4699 3.2479 -0.6453 31 1 9.3064 2.2874 -2.0061 32 1 8.3036 2.4420 -3.4687 33 1 11.5666 3.8154 -4.4807 34 1 6.3916 1.1350 1.3616 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234390880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:08 Heat of formation + Delta-G solvation = 25.003632 kcal Electronic energy + Delta-G solvation = -14430.340260 eV Core-core repulsion = 11976.771000 eV Total energy + Delta-G solvation = -2453.569260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.95832 -37.33273 -36.49497 -34.85229 -32.63541 -31.11123 -28.87481 -27.28807 -25.27313 -24.27477 -22.54377 -21.71624 -21.07715 -18.69626 -17.79669 -16.73918 -16.50341 -16.24659 -15.91289 -15.32619 -15.16901 -14.85768 -14.59903 -14.25856 -13.83306 -13.31361 -13.04706 -12.91479 -12.76019 -12.71566 -12.59857 -12.45197 -11.68880 -11.60650 -11.31859 -10.91271 -10.58122 -10.41629 -9.47902 -9.22119 -8.23351 -6.33602 1.18202 1.38536 1.40070 1.52118 1.95641 2.11210 2.39573 3.10832 3.49296 3.76607 3.82139 4.03648 4.16660 4.21952 4.39174 4.44112 4.57859 4.66894 4.69190 4.72926 4.91449 5.01639 5.06432 5.09688 5.42389 5.47317 5.67284 5.79859 5.80849 6.06271 6.19603 6.34236 6.40468 6.82529 7.16153 7.35965 8.88110 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.059387 B = 0.004158 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.367215 B = 6732.312394 C = 6839.214512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.701 5.701 3 C 0.152 3.848 4 C -0.025 4.025 5 C -0.042 4.042 6 N -0.451 5.451 7 C 0.112 3.888 8 C -0.106 4.106 9 C 0.028 3.972 10 C -0.545 4.545 11 H 0.054 0.946 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.175 3.825 19 N -0.524 5.524 20 H 0.025 0.975 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.342 0.658 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.186 0.814 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 -5.868 6.417 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.331 5.331 3 C 0.022 3.978 4 C -0.154 4.154 5 C -0.177 4.177 6 N -0.132 5.132 7 C -0.010 4.010 8 C -0.144 4.144 9 C -0.010 4.010 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.785 3.215 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.107 4.107 19 N -0.243 5.243 20 H 0.044 0.956 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.159 0.841 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.203 0.797 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.810 -6.027 6.345 17.202 hybrid contribution 0.849 1.178 -0.193 1.465 sum -13.961 -4.849 6.151 16.009 Atomic orbital electron populations 1.22254 0.86375 1.02685 1.00831 1.60472 1.08740 1.13606 1.50330 1.20046 0.86334 0.90178 1.01210 1.20749 0.96365 1.09414 0.88828 1.22821 0.83151 1.10438 1.01263 1.45761 1.07171 1.51998 1.08247 1.22067 0.84379 0.98585 0.95931 1.21740 0.98129 0.94420 1.00131 1.18930 0.92176 0.95721 0.94180 1.21664 1.10703 0.94206 1.31703 0.92725 1.25883 0.96708 1.01633 0.95222 1.70067 1.18655 1.33643 1.34538 0.85470 0.78238 0.79766 0.78019 1.19002 1.20306 1.20342 1.25400 0.97286 1.05151 0.82871 1.70094 1.01436 1.21511 1.31285 0.95633 0.91108 0.90415 0.84117 0.88950 0.94591 0.79715 0.87530 0.88400 0.93236 0.92841 0.97746 0.98002 0.92666 0.75865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.70 127.69 1.37 1.80 16 2 N -0.70 -15.05 6.84 -541.22 -3.70 -18.75 16 3 C 0.15 3.54 6.22 85.55 0.53 4.07 16 4 C -0.02 -0.71 6.60 41.39 0.27 -0.43 16 5 C -0.04 -1.17 11.49 83.09 0.95 -0.22 16 6 N -0.45 -12.94 2.75 -529.07 -1.46 -14.39 16 7 C 0.11 3.25 6.15 86.38 0.53 3.78 16 8 C -0.11 -3.96 5.48 30.59 0.17 -3.79 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 12 C 0.00 0.21 5.46 84.65 0.46 0.67 16 13 N -0.93 -54.45 13.29 21.44 0.28 -54.16 16 14 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.18 4.97 12.56 180.26 2.26 7.24 16 19 N -0.52 -16.33 11.25 -188.32 -2.12 -18.45 16 20 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.34 7.60 8.81 -89.69 -0.79 6.81 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.23 4.90 8.06 -2.92 -0.02 4.87 16 Total: -1.00 -64.20 294.27 2.24 -61.96 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.28 Total: 13.55 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 6.93 Total: -15.07 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -6.99 Total: -105.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.20 2.24 -61.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234390880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.959 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds