Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 6 6 C 1.50700 * 109.47526 * 174.99949 * 5 2 1 7 7 C 1.34671 * 125.98929 * 124.71540 * 6 5 2 8 8 N 1.36882 * 106.81532 * 179.84983 * 7 6 5 9 9 C 1.46501 * 126.39501 * 180.12306 * 8 7 6 10 10 C 1.53004 * 109.47086 * 270.32157 * 9 8 7 11 11 C 1.50697 * 109.47258 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00052 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99934 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99904 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47140 * 90.00309 * 15 13 11 17 17 H 1.48502 * 109.47192 * 210.00040 * 15 13 11 18 18 H 1.48496 * 109.47154 * 330.00377 * 15 13 11 19 19 C 1.35038 * 107.20466 * 0.41462 * 8 7 6 20 20 N 1.30491 * 108.70208 * 359.74055 * 19 8 7 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.00906 * 110.99709 * 299.99604 * 4 2 1 25 25 H 1.00904 * 111.00081 * 63.94806 * 4 2 1 26 26 H 1.09001 * 109.47317 * 295.00638 * 5 2 1 27 27 H 1.09006 * 109.47194 * 55.00274 * 5 2 1 28 28 H 1.08001 * 126.58910 * 359.96813 * 7 6 5 29 29 H 1.08997 * 109.47231 * 30.31984 * 9 8 7 30 30 H 1.09001 * 109.47059 * 150.32385 * 9 8 7 31 31 H 1.09005 * 109.46917 * 300.00340 * 10 9 8 32 32 H 1.09001 * 109.46985 * 60.00184 * 10 9 8 33 33 H 0.96998 * 120.00579 * 179.97438 * 14 13 11 34 34 H 1.08004 * 125.64794 * 179.76232 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0400 -0.7213 -1.2492 6 6 3.5419 -0.6150 -1.3127 7 6 4.4049 -1.6447 -1.4055 8 7 5.6626 -1.1054 -1.4389 9 6 6.9232 -1.8451 -1.5389 10 6 7.4282 -2.1843 -0.1349 11 6 8.7246 -2.9458 -0.2377 12 1 9.1464 -3.1655 -1.2074 13 6 9.3726 -3.3611 0.9061 14 7 8.8593 -3.0932 2.0869 15 14 10.9800 -4.3043 0.7788 16 1 12.1164 -3.3484 0.7803 17 1 11.1064 -5.2255 1.9367 18 1 10.9949 -5.0889 -0.4819 19 6 5.5247 0.2353 -1.3560 20 7 4.2537 0.5214 -1.2808 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6962 -0.2350 2.0386 25 1 1.7502 -1.6649 1.1910 26 1 1.7516 -1.7716 -1.2056 27 1 1.6054 -0.2618 -2.1370 28 1 4.1530 -2.6940 -1.4476 29 1 6.7607 -2.7660 -2.0988 30 1 7.6639 -1.2329 -2.0533 31 1 7.5907 -1.2633 0.4251 32 1 6.6875 -2.7965 0.3795 33 1 9.3151 -3.3856 2.8917 34 1 6.3325 0.9522 -1.3529 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235226382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = 17.988799 kcal Electronic energy + Delta-G solvation = -14821.488931 eV Core-core repulsion = 12367.615486 eV Total energy + Delta-G solvation = -2453.873446 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.79806 -37.68096 -36.22138 -34.44513 -31.61611 -31.14094 -29.63537 -27.64816 -26.36940 -23.56458 -22.23294 -21.52574 -20.55985 -18.77894 -17.56580 -17.00098 -16.64627 -15.77241 -15.58555 -15.48895 -14.79598 -14.47966 -14.42036 -14.23783 -13.86092 -13.41484 -13.10182 -12.99494 -12.88110 -12.51127 -12.34945 -12.08220 -11.86667 -11.77015 -11.42862 -10.72466 -10.61474 -10.20938 -9.42161 -9.06577 -8.24844 -6.39017 1.33651 1.42433 1.43019 1.54290 2.15944 2.33668 2.42138 3.09782 3.69772 3.91263 3.94432 4.10974 4.19425 4.28851 4.47260 4.51475 4.61955 4.68588 4.71289 4.97636 4.99603 5.03482 5.23265 5.31148 5.36847 5.43000 5.69989 5.71091 6.01845 6.07214 6.43484 6.49490 6.72212 6.78090 7.31892 7.32574 8.87214 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.045491 B = 0.005261 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.354810 B = 5321.146787 C = 5667.351833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.061 0.939 4 N -0.856 5.856 5 C -0.022 4.022 6 C 0.003 3.997 7 C -0.069 4.069 8 N -0.450 5.450 9 C 0.120 3.880 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.075 0.925 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.258 1.258 19 C 0.163 3.837 20 N -0.518 5.518 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.342 0.658 25 H 0.342 0.658 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.177 0.823 29 H 0.093 0.907 30 H 0.100 0.900 31 H -0.009 1.009 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 2.704 -6.643 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.013 4.013 3 H 0.079 0.921 4 N -0.386 5.386 5 C -0.061 4.061 6 C -0.126 4.126 7 C -0.203 4.203 8 N -0.130 5.130 9 C -0.001 4.001 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.093 0.907 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.181 1.181 19 C -0.119 4.119 20 N -0.238 5.238 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.194 0.806 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.936 3.569 -6.707 14.148 hybrid contribution 0.336 -1.326 0.733 1.552 sum -11.600 2.242 -5.973 13.239 Atomic orbital electron populations 1.22556 0.95802 1.02568 1.02687 1.21268 0.92604 0.97622 0.89816 0.92119 1.58747 1.68574 1.06862 1.04442 1.19962 0.86811 1.01470 0.97816 1.20755 0.96813 0.88154 1.06899 1.22733 0.83851 1.00542 1.13192 1.45775 1.07590 1.07806 1.51867 1.22038 0.81955 0.96686 0.99420 1.19212 0.95372 0.95254 0.91550 1.21500 1.07096 1.36099 0.93561 0.90732 1.26007 1.01798 0.96962 0.94838 1.70128 1.41162 1.47505 0.98433 0.85361 0.78673 0.78343 0.78152 1.19746 1.21144 1.18144 1.25206 0.96319 0.84121 1.06231 1.70013 1.02433 1.29991 1.21370 0.91380 0.92363 0.91769 0.84456 0.84480 0.89726 0.89877 0.80615 0.88891 0.88221 0.99090 0.99257 0.92684 0.76935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.48 71.98 0.68 -2.33 16 2 C 0.10 2.38 3.35 44.91 0.15 2.53 16 3 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 4 N -0.86 -22.18 8.97 -168.68 -1.51 -23.70 16 5 C -0.02 -0.56 5.39 29.85 0.16 -0.39 16 6 C 0.00 0.12 6.09 41.39 0.25 0.37 16 7 C -0.07 -2.45 11.46 83.09 0.95 -1.50 16 8 N -0.45 -16.89 2.75 -529.07 -1.46 -18.35 16 9 C 0.12 4.65 6.09 86.38 0.53 5.17 16 10 C 0.02 1.22 5.30 29.85 0.16 1.38 16 11 C -0.54 -29.24 9.11 25.60 0.23 -29.01 16 12 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 13 C 0.00 0.14 5.46 84.65 0.46 0.60 16 14 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 15 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 C 0.16 6.01 12.56 180.27 2.26 8.28 16 20 N -0.52 -19.54 11.20 -188.32 -2.11 -21.65 16 21 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.34 7.80 9.04 -89.69 -0.81 6.99 16 25 H 0.34 7.83 8.98 -89.69 -0.81 7.03 16 26 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 27 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.18 5.42 8.06 -2.91 -0.02 5.40 16 29 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 31 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.21 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -67.22 292.88 2.55 -64.67 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.53 Total: 25.27 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 5.84 Total: -14.89 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.79 Total: -119.65 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.22 2.55 -64.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235226382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.658 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds