Wall clock time and date at job start Mon Mar 30 2020 02:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47424 * 2 1 4 4 N 1.46902 * 109.47301 * 240.01037 * 2 1 3 5 5 C 1.52996 * 109.47617 * 120.00561 * 2 1 3 6 6 C 1.50700 * 109.47333 * 184.99990 * 5 2 1 7 7 C 1.34669 * 125.98751 * 125.01561 * 6 5 2 8 8 N 1.36884 * 106.81372 * 179.97438 * 7 6 5 9 9 C 1.46503 * 126.39494 * 180.26001 * 8 7 6 10 10 C 1.52999 * 109.47551 * 269.71709 * 9 8 7 11 11 C 1.50696 * 109.47538 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99824 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99878 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00189 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47564 * 90.00258 * 15 13 11 17 17 H 1.48507 * 109.47221 * 210.00247 * 15 13 11 18 18 H 1.48495 * 109.47293 * 329.99776 * 15 13 11 19 19 C 1.35044 * 107.20791 * 0.02562 * 8 7 6 20 20 N 1.30498 * 108.69841 * 359.97438 * 19 8 7 21 21 H 1.08998 * 109.47136 * 299.99303 * 1 2 3 22 22 H 1.08997 * 109.47691 * 59.99613 * 1 2 3 23 23 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.00904 * 110.99731 * 296.04164 * 4 2 1 25 25 H 1.00899 * 111.00090 * 59.98987 * 4 2 1 26 26 H 1.09000 * 109.46803 * 64.99823 * 5 2 1 27 27 H 1.08999 * 109.46947 * 305.00143 * 5 2 1 28 28 H 1.07996 * 126.59301 * 359.97438 * 7 6 5 29 29 H 1.09001 * 109.47065 * 29.71638 * 9 8 7 30 30 H 1.09007 * 109.46974 * 149.71756 * 9 8 7 31 31 H 1.09004 * 109.47208 * 300.00735 * 10 9 8 32 32 H 1.09002 * 109.46925 * 59.99536 * 10 9 8 33 33 H 0.96998 * 120.00055 * 179.97438 * 14 13 11 34 34 H 1.08003 * 125.64687 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0400 -0.7213 1.2491 6 6 3.5419 -0.6150 1.3125 7 6 4.2580 -0.1305 2.3450 8 7 5.5765 -0.2166 1.9874 9 6 6.7259 0.1894 2.8000 10 6 7.0633 1.6535 2.5109 11 6 8.2460 2.0709 3.3464 12 1 8.7103 1.3629 4.0168 13 6 8.7346 3.3570 3.2555 14 7 9.7665 3.7215 3.9850 15 14 7.9302 4.5822 2.0974 16 1 6.8520 5.3080 2.8157 17 1 8.9472 5.5531 1.6197 18 1 7.3519 3.8595 0.9362 19 6 5.6202 -0.7506 0.7478 20 7 4.3997 -0.9864 0.3506 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7503 -1.6647 -1.1912 25 1 1.6960 -0.2347 -2.0386 26 1 1.7517 -1.7716 1.2053 27 1 1.6054 -0.2619 2.1369 28 1 3.8672 0.2524 3.2761 29 1 6.4828 0.0744 3.8563 30 1 7.5839 -0.4365 2.5543 31 1 7.3063 1.7686 1.4546 32 1 6.2054 2.2794 2.7566 33 1 10.1105 4.6261 3.9208 34 1 6.5167 -0.9494 0.1793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235538422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:41 Heat of formation + Delta-G solvation = 43.789545 kcal Electronic energy + Delta-G solvation = -14853.826014 eV Core-core repulsion = 12401.071373 eV Total energy + Delta-G solvation = -2452.754641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48326 -36.69106 -34.59773 -32.57127 -30.47366 -29.82995 -28.62278 -26.47791 -24.76819 -21.46800 -21.08768 -20.16304 -19.44952 -17.27424 -16.08625 -15.83197 -14.97546 -14.49976 -14.25450 -13.94609 -13.47121 -13.43670 -13.06610 -13.02026 -12.69545 -12.34348 -11.85839 -11.69360 -11.33507 -11.15996 -10.96227 -10.55722 -10.28620 -9.99027 -9.47110 -9.23827 -8.78640 -8.69102 -8.37427 -7.81519 -6.19890 -4.21416 2.63391 3.22753 3.31032 3.36088 3.50609 3.66652 4.33030 4.65918 4.91625 4.97335 5.13666 5.21396 5.28763 5.41861 5.49666 5.59273 5.70365 5.76577 5.89446 5.95751 5.97341 6.19632 6.26045 6.35895 6.81597 6.96603 7.13492 7.28868 7.38849 7.52728 7.65486 7.84309 8.31190 8.70822 8.80974 9.40903 10.92611 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038037 B = 0.005816 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.952810 B = 4813.063447 C = 5157.002734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.096 3.904 3 H 0.076 0.924 4 N -0.819 5.819 5 C -0.022 4.022 6 C -0.006 4.006 7 C -0.060 4.060 8 N -0.448 5.448 9 C 0.112 3.888 10 C -0.022 4.022 11 C -0.529 4.529 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.166 3.834 20 N -0.462 5.462 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.335 0.665 25 H 0.330 0.670 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 -7.742 -5.967 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.016 4.016 3 H 0.094 0.906 4 N -0.347 5.347 5 C -0.060 4.060 6 C -0.137 4.137 7 C -0.195 4.195 8 N -0.128 5.128 9 C -0.009 4.009 10 C -0.060 4.060 11 C -0.568 4.568 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.116 4.116 20 N -0.179 5.179 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.533 -7.700 -6.312 17.617 hybrid contribution -0.977 1.106 0.130 1.481 sum -15.511 -6.594 -6.182 17.952 Atomic orbital electron populations 1.22715 0.98522 1.01620 1.01971 1.21335 0.90559 0.98684 0.91055 0.90589 1.58684 1.67334 1.05801 1.02906 1.19812 0.89090 1.00226 0.96913 1.20268 0.95231 1.06408 0.91813 1.22421 0.83723 1.10937 1.02399 1.45895 1.07166 1.44729 1.14998 1.22117 0.85095 0.99243 0.94415 1.19897 0.97609 0.90374 0.98083 1.20883 1.13139 0.98128 1.24621 0.90618 1.24949 0.94530 0.98146 0.95249 1.69895 1.24181 1.19293 1.40034 0.86787 0.79374 0.81279 0.81965 1.20159 1.21071 1.18976 1.24951 0.98127 1.02862 0.85693 1.70233 0.98289 1.21324 1.28103 0.92242 0.92973 0.92878 0.85267 0.85831 0.91626 0.90947 0.81984 0.89846 0.89490 0.95817 0.96404 0.92412 0.78788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 9.48 37.15 0.35 -1.32 16 2 C 0.10 1.12 3.35 -67.72 -0.23 0.89 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 N -0.82 -9.78 8.27 -4.67 -0.04 -9.82 16 5 C -0.02 -0.27 5.39 -27.89 -0.15 -0.42 16 6 C -0.01 -0.10 6.32 -82.85 -0.52 -0.63 16 7 C -0.06 -0.99 11.46 -16.56 -0.19 -1.18 16 8 N -0.45 -7.97 2.75 -118.57 -0.33 -8.30 16 9 C 0.11 2.10 6.09 -4.04 -0.02 2.08 16 10 C -0.02 -0.50 4.36 -27.89 -0.12 -0.62 16 11 C -0.53 -14.39 9.66 -34.44 -0.33 -14.72 16 12 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 15 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 C 0.17 2.91 12.56 -90.38 -1.14 1.77 16 20 N -0.46 -8.25 10.37 -10.87 -0.11 -8.37 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.33 3.65 8.98 -39.29 -0.35 3.29 16 25 H 0.33 3.39 9.04 -39.29 -0.36 3.04 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.20 2.89 8.06 -52.48 -0.42 2.46 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -31.15 288.04 -7.77 -38.92 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.29 Total: 4.62 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.45 Total: -12.16 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.30 Total: -52.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.15 -7.77 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235538422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.708 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds