Wall clock time and date at job start Mon Mar 30 2020 02:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47424 * 2 1 4 4 N 1.46902 * 109.47301 * 240.01037 * 2 1 3 5 5 C 1.52996 * 109.47617 * 120.00561 * 2 1 3 6 6 C 1.50700 * 109.47333 * 184.99990 * 5 2 1 7 7 C 1.34669 * 125.98751 * 125.01561 * 6 5 2 8 8 N 1.36884 * 106.81372 * 179.97438 * 7 6 5 9 9 C 1.46503 * 126.39494 * 180.26001 * 8 7 6 10 10 C 1.52999 * 109.47551 * 269.71709 * 9 8 7 11 11 C 1.50696 * 109.47538 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99824 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99878 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00189 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47564 * 90.00258 * 15 13 11 17 17 H 1.48507 * 109.47221 * 210.00247 * 15 13 11 18 18 H 1.48495 * 109.47293 * 329.99776 * 15 13 11 19 19 C 1.35044 * 107.20791 * 0.02562 * 8 7 6 20 20 N 1.30498 * 108.69841 * 359.97438 * 19 8 7 21 21 H 1.08998 * 109.47136 * 299.99303 * 1 2 3 22 22 H 1.08997 * 109.47691 * 59.99613 * 1 2 3 23 23 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.00904 * 110.99731 * 296.04164 * 4 2 1 25 25 H 1.00899 * 111.00090 * 59.98987 * 4 2 1 26 26 H 1.09000 * 109.46803 * 64.99823 * 5 2 1 27 27 H 1.08999 * 109.46947 * 305.00143 * 5 2 1 28 28 H 1.07996 * 126.59301 * 359.97438 * 7 6 5 29 29 H 1.09001 * 109.47065 * 29.71638 * 9 8 7 30 30 H 1.09007 * 109.46974 * 149.71756 * 9 8 7 31 31 H 1.09004 * 109.47208 * 300.00735 * 10 9 8 32 32 H 1.09002 * 109.46925 * 59.99536 * 10 9 8 33 33 H 0.96998 * 120.00055 * 179.97438 * 14 13 11 34 34 H 1.08003 * 125.64687 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0400 -0.7213 1.2491 6 6 3.5419 -0.6150 1.3125 7 6 4.2580 -0.1305 2.3450 8 7 5.5765 -0.2166 1.9874 9 6 6.7259 0.1894 2.8000 10 6 7.0633 1.6535 2.5109 11 6 8.2460 2.0709 3.3464 12 1 8.7103 1.3629 4.0168 13 6 8.7346 3.3570 3.2555 14 7 9.7665 3.7215 3.9850 15 14 7.9302 4.5822 2.0974 16 1 6.8520 5.3080 2.8157 17 1 8.9472 5.5531 1.6197 18 1 7.3519 3.8595 0.9362 19 6 5.6202 -0.7506 0.7478 20 7 4.3997 -0.9864 0.3506 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7503 -1.6647 -1.1912 25 1 1.6960 -0.2347 -2.0386 26 1 1.7517 -1.7716 1.2053 27 1 1.6054 -0.2619 2.1369 28 1 3.8672 0.2524 3.2761 29 1 6.4828 0.0744 3.8563 30 1 7.5839 -0.4365 2.5543 31 1 7.3063 1.7686 1.4546 32 1 6.2054 2.2794 2.7566 33 1 10.1105 4.6261 3.9208 34 1 6.5167 -0.9494 0.1793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235538422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:41 Heat of formation + Delta-G solvation = 24.316784 kcal Electronic energy + Delta-G solvation = -14854.670417 eV Core-core repulsion = 12401.071373 eV Total energy + Delta-G solvation = -2453.599044 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.78652 -37.65047 -36.22767 -34.46714 -31.80898 -31.35902 -29.50922 -27.76919 -26.32545 -23.20871 -22.11450 -21.54317 -20.63240 -19.21225 -17.50448 -16.84597 -16.61120 -15.89480 -15.65734 -15.23894 -14.84025 -14.71540 -14.54256 -14.39758 -13.83632 -13.52109 -13.22786 -13.01076 -12.74825 -12.40625 -12.25535 -12.04659 -11.88890 -11.78449 -11.55843 -10.84646 -10.57100 -10.19880 -9.27883 -9.05163 -8.36877 -6.42358 1.30045 1.31635 1.34018 1.43701 2.13711 2.28709 2.39096 2.98669 3.80964 3.83914 3.99496 4.11604 4.17051 4.32210 4.35784 4.43948 4.62937 4.64045 4.72099 4.91330 5.02878 5.08224 5.14564 5.15001 5.22539 5.40814 5.49278 5.66718 6.04129 6.14213 6.47619 6.54387 6.65658 6.84312 7.23404 7.40921 8.78881 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038037 B = 0.005816 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.952810 B = 4813.063447 C = 5157.002734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 H 0.053 0.947 4 N -0.836 5.836 5 C -0.022 4.022 6 C -0.011 4.011 7 C -0.075 4.075 8 N -0.454 5.454 9 C 0.126 3.874 10 C -0.014 4.014 11 C -0.532 4.532 12 H 0.049 0.951 13 C 0.018 3.982 14 N -0.941 5.941 15 Si 0.942 3.058 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.258 1.258 19 C 0.153 3.847 20 N -0.478 5.478 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.340 0.660 25 H 0.337 0.663 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.269 0.731 34 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 -7.896 -6.742 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 H 0.071 0.929 4 N -0.365 5.365 5 C -0.061 4.061 6 C -0.142 4.142 7 C -0.209 4.209 8 N -0.135 5.135 9 C 0.004 3.996 10 C -0.052 4.052 11 C -0.571 4.571 12 H 0.067 0.933 13 C -0.181 4.181 14 N -0.581 5.581 15 Si 0.766 3.234 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.129 4.129 20 N -0.197 5.197 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.153 0.847 25 H 0.150 0.850 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.199 0.801 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.477 -7.870 -7.094 19.590 hybrid contribution -0.372 1.083 0.386 1.208 sum -16.850 -6.787 -6.708 19.364 Atomic orbital electron populations 1.22577 0.96122 1.02449 1.02612 1.21234 0.92364 0.97144 0.90601 0.92863 1.58662 1.68049 1.06356 1.03470 1.19965 0.86775 1.01098 0.98233 1.20886 0.96867 1.05269 0.91133 1.22887 0.83354 1.11236 1.03456 1.45836 1.07230 1.45331 1.15134 1.21817 0.86089 0.96637 0.95050 1.19742 0.95595 0.93197 0.96685 1.21197 1.14036 0.97620 1.24216 0.93305 1.25798 0.95095 1.00291 0.96908 1.70020 1.25980 1.20036 1.42073 0.85781 0.78591 0.78954 0.80032 1.19302 1.20596 1.18260 1.25442 0.98892 1.02775 0.85775 1.70265 0.98732 1.21882 1.28785 0.91527 0.92434 0.91915 0.84667 0.85010 0.90815 0.89033 0.80105 0.89070 0.88518 0.96344 0.96657 0.92203 0.77058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 9.48 71.98 0.68 -2.01 16 2 C 0.10 2.11 3.35 44.91 0.15 2.26 16 3 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 4 N -0.84 -18.65 8.27 -168.69 -1.39 -20.05 16 5 C -0.02 -0.50 5.39 29.85 0.16 -0.34 16 6 C -0.01 -0.35 6.32 41.39 0.26 -0.08 16 7 C -0.08 -2.38 11.46 83.09 0.95 -1.43 16 8 N -0.45 -15.46 2.75 -529.05 -1.46 -16.91 16 9 C 0.13 4.54 6.09 86.38 0.53 5.06 16 10 C -0.01 -0.63 4.36 29.85 0.13 -0.50 16 11 C -0.53 -28.99 9.66 25.60 0.25 -28.74 16 12 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 13 C 0.02 0.99 5.47 84.65 0.46 1.46 16 14 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 15 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 19 C 0.15 5.13 12.56 180.26 2.26 7.40 16 20 N -0.48 -16.41 10.37 -188.31 -1.95 -18.36 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.34 6.83 8.98 -89.69 -0.81 6.02 16 25 H 0.34 6.46 9.04 -89.69 -0.81 5.65 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 28 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 32 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.21 5.98 8.06 -2.91 -0.02 5.96 16 Total: -1.00 -65.57 288.04 2.64 -62.94 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.58 Total: 20.23 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 5.84 Total: -16.92 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.50 Total: -112.04 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -65.57 2.64 -62.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235538422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.255 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds