Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48494 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46634 * 299.99760 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99328 * 3 2 1 7 7 C 1.37879 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47121 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46949 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99848 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47214 * 180.02562 * 13 12 11 15 15 C 1.52995 * 115.55153 * 179.97438 * 14 13 12 16 16 C 1.53000 * 117.49920 * 34.33073 * 15 14 13 17 17 C 1.53002 * 60.02940 * 252.47484 * 16 15 14 18 18 C 1.52999 * 117.51734 * 325.69730 * 14 13 12 19 19 C 1.52998 * 60.00307 * 107.47951 * 18 14 13 20 20 H 0.97003 * 119.99947 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47162 * 59.99665 * 9 7 2 22 22 H 1.08994 * 109.47257 * 299.99531 * 9 7 2 23 23 H 1.09005 * 109.46598 * 60.00038 * 10 9 7 24 24 H 1.09003 * 109.47313 * 300.00410 * 10 9 7 25 25 H 1.09005 * 109.47001 * 60.00716 * 11 10 9 26 26 H 1.08994 * 109.47576 * 300.00418 * 11 10 9 27 27 H 1.00899 * 111.00045 * 56.05261 * 12 11 10 28 28 H 1.08995 * 109.47366 * 59.99727 * 13 12 11 29 29 H 1.08998 * 109.47006 * 299.99910 * 13 12 11 30 30 H 1.09008 * 115.55064 * 179.97438 * 15 14 13 31 31 H 1.09002 * 117.49833 * 359.97438 * 16 15 14 32 32 H 1.09002 * 117.49953 * 144.97630 * 16 15 14 33 33 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 34 34 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 35 35 H 1.09000 * 117.50363 * 214.97056 * 18 14 13 36 36 H 1.09000 * 117.49917 * 359.97438 * 18 14 13 37 37 H 1.08997 * 117.50441 * 252.51119 * 19 18 14 38 38 H 1.09002 * 117.49985 * 107.48346 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 1.7344 -7.3950 0.0018 14 6 2.7593 -8.5310 0.0031 15 6 2.1764 -9.9456 0.0039 16 6 0.8714 -10.1724 -0.7619 17 6 0.8696 -10.1720 0.7681 18 6 4.0656 -8.3054 -0.7607 19 6 4.0641 -8.3044 0.7693 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 2.8718 -3.6043 0.8906 24 1 2.8719 -3.6044 -0.8894 25 1 0.8532 -5.0452 -0.8887 26 1 0.8537 -5.0446 0.8913 27 1 3.0695 -6.0363 0.7832 28 1 1.1098 -7.4697 -0.8883 29 1 1.1092 -7.4692 0.8916 30 1 2.9066 -10.7550 0.0044 31 1 0.4279 -9.3137 -1.2659 32 1 0.7432 -11.1308 -1.2651 33 1 0.4248 -9.3131 1.2707 34 1 0.7405 -11.1302 1.2714 35 1 4.5099 -9.1647 -1.2630 36 1 4.1950 -7.3476 -1.2646 37 1 4.1925 -7.3460 1.2722 38 1 4.5072 -9.1632 1.2736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236168210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = 30.993792 kcal Electronic energy + Delta-G solvation = -14862.795949 eV Core-core repulsion = 12513.026785 eV Total energy + Delta-G solvation = -2349.769163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38640 -36.19201 -34.95582 -33.17078 -30.99053 -27.23067 -25.13715 -23.23875 -22.79498 -22.14463 -21.92510 -20.22231 -18.41103 -16.42146 -16.15936 -15.81307 -15.26141 -14.48667 -14.14465 -13.58690 -13.52245 -13.28495 -12.73823 -12.20986 -11.87822 -11.58935 -11.44925 -11.41704 -11.04051 -11.01801 -10.83451 -10.79340 -10.54965 -10.42221 -10.03628 -9.68730 -9.32247 -9.30187 -9.02048 -8.32638 -8.12239 -5.97581 -3.99529 3.32883 3.40141 3.41833 3.44859 4.10693 4.33839 4.40007 4.50294 4.73012 4.85025 4.89400 5.05813 5.14575 5.29353 5.38333 5.47272 5.65702 5.70870 5.73473 5.78429 5.85304 5.91587 5.98302 6.02502 6.09096 6.15290 6.33810 6.34088 6.73911 6.79012 7.15896 7.36471 7.63890 7.71282 7.86075 8.03069 8.46437 9.07958 9.64450 11.13956 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054835 B = 0.004158 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.499102 B = 6732.094146 C = 7073.159666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.094 3.906 14 C -0.100 4.100 15 C -0.112 4.112 16 C -0.178 4.178 17 C -0.181 4.181 18 C -0.155 4.155 19 C -0.174 4.174 20 H 0.259 0.741 21 H 0.016 0.984 22 H 0.013 0.987 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.336 0.664 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -19.723 0.684 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.323 5.323 13 C -0.036 4.036 14 C -0.101 4.101 15 C -0.130 4.130 16 C -0.215 4.215 17 C -0.218 4.218 18 C -0.192 4.192 19 C -0.212 4.212 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.155 0.845 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.043 -19.589 0.002 20.001 hybrid contribution 0.017 0.863 0.958 1.289 sum 4.060 -18.725 0.960 19.184 Atomic orbital electron populations 1.69981 1.06068 1.26426 1.51164 1.25036 0.94848 0.99279 0.95402 0.86538 0.80151 0.83799 0.77541 1.19715 1.21011 1.21064 1.21302 0.93099 0.91052 1.50161 0.92613 1.19073 0.94035 0.91412 0.97114 1.21618 0.99166 0.92974 1.00676 1.22118 0.94121 0.90786 0.99888 1.60595 1.20482 1.01361 1.49822 1.21356 0.94217 0.87701 1.00287 1.20867 0.89493 0.93092 1.06600 1.21630 0.90693 0.95423 1.05297 1.22976 1.01092 1.03064 0.94368 1.22993 1.01245 1.02975 0.94568 1.22973 0.98794 1.03531 0.93893 1.22972 1.00310 1.02650 0.95224 0.93109 0.96572 0.96822 0.93733 0.92546 0.91493 0.95828 0.84464 0.90760 0.95168 0.87897 0.88461 0.88978 0.88605 0.89021 0.89660 0.87137 0.88648 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 12 N -0.69 -10.29 5.42 -113.78 -0.62 -10.91 16 13 C 0.09 1.21 4.88 -3.82 -0.02 1.19 16 14 C -0.10 -1.12 2.51 -154.51 -0.39 -1.51 16 15 C -0.11 -1.09 5.85 -90.59 -0.53 -1.62 16 16 C -0.18 -1.65 9.92 -26.73 -0.27 -1.91 16 17 C -0.18 -1.67 9.92 -26.69 -0.26 -1.93 16 18 C -0.15 -1.72 9.64 -26.73 -0.26 -1.98 16 19 C -0.17 -1.85 9.60 -26.73 -0.26 -2.11 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.34 4.77 6.62 -39.29 -0.26 4.51 16 28 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 29 H 0.03 0.39 6.91 -51.93 -0.36 0.04 16 30 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.10 0.96 6.75 -51.93 -0.35 0.61 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.95 6.76 -51.93 -0.35 0.60 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.40 7.58 -51.93 -0.39 1.01 16 37 H 0.10 1.05 6.35 -51.93 -0.33 0.72 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -29.82 306.00 -9.58 -39.40 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.59 Total: 1.19 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.70 Total: -24.59 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.12 Total: -37.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.82 -9.58 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236168210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.395 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds