Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48494 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46634 * 299.99760 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99328 * 3 2 1 7 7 C 1.37879 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47121 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46949 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99848 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47214 * 180.02562 * 13 12 11 15 15 C 1.52995 * 115.55153 * 179.97438 * 14 13 12 16 16 C 1.53000 * 117.49920 * 34.33073 * 15 14 13 17 17 C 1.53002 * 60.02940 * 252.47484 * 16 15 14 18 18 C 1.52999 * 117.51734 * 325.69730 * 14 13 12 19 19 C 1.52998 * 60.00307 * 107.47951 * 18 14 13 20 20 H 0.97003 * 119.99947 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47162 * 59.99665 * 9 7 2 22 22 H 1.08994 * 109.47257 * 299.99531 * 9 7 2 23 23 H 1.09005 * 109.46598 * 60.00038 * 10 9 7 24 24 H 1.09003 * 109.47313 * 300.00410 * 10 9 7 25 25 H 1.09005 * 109.47001 * 60.00716 * 11 10 9 26 26 H 1.08994 * 109.47576 * 300.00418 * 11 10 9 27 27 H 1.00899 * 111.00045 * 56.05261 * 12 11 10 28 28 H 1.08995 * 109.47366 * 59.99727 * 13 12 11 29 29 H 1.08998 * 109.47006 * 299.99910 * 13 12 11 30 30 H 1.09008 * 115.55064 * 179.97438 * 15 14 13 31 31 H 1.09002 * 117.49833 * 359.97438 * 16 15 14 32 32 H 1.09002 * 117.49953 * 144.97630 * 16 15 14 33 33 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 34 34 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 35 35 H 1.09000 * 117.50363 * 214.97056 * 18 14 13 36 36 H 1.09000 * 117.49917 * 359.97438 * 18 14 13 37 37 H 1.08997 * 117.50441 * 252.51119 * 19 18 14 38 38 H 1.09002 * 117.49985 * 107.48346 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 1.7344 -7.3950 0.0018 14 6 2.7593 -8.5310 0.0031 15 6 2.1764 -9.9456 0.0039 16 6 0.8714 -10.1724 -0.7619 17 6 0.8696 -10.1720 0.7681 18 6 4.0656 -8.3054 -0.7607 19 6 4.0641 -8.3044 0.7693 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 2.8718 -3.6043 0.8906 24 1 2.8719 -3.6044 -0.8894 25 1 0.8532 -5.0452 -0.8887 26 1 0.8537 -5.0446 0.8913 27 1 3.0695 -6.0363 0.7832 28 1 1.1098 -7.4697 -0.8883 29 1 1.1092 -7.4692 0.8916 30 1 2.9066 -10.7550 0.0044 31 1 0.4279 -9.3137 -1.2659 32 1 0.7432 -11.1308 -1.2651 33 1 0.4248 -9.3131 1.2707 34 1 0.7405 -11.1302 1.2714 35 1 4.5099 -9.1647 -1.2630 36 1 4.1950 -7.3476 -1.2646 37 1 4.1925 -7.3460 1.2722 38 1 4.5072 -9.1632 1.2736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236168210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = 14.745276 kcal Electronic energy + Delta-G solvation = -14863.500537 eV Core-core repulsion = 12513.026785 eV Total energy + Delta-G solvation = -2350.473752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28011 -37.42439 -36.11592 -35.04271 -32.81479 -28.86658 -26.62682 -24.52876 -23.60290 -23.36099 -22.82800 -22.01552 -19.35442 -18.50145 -17.12664 -17.02690 -16.51072 -16.36066 -15.31880 -14.97118 -14.78750 -14.36409 -14.06927 -13.73495 -13.57456 -13.24987 -12.76826 -12.50852 -12.43031 -12.32351 -12.18193 -11.89919 -11.87880 -11.60082 -11.53913 -11.38004 -11.07273 -10.84726 -10.56806 -10.15182 -9.36236 -8.21040 -6.32241 1.39935 1.40294 1.54082 2.40686 2.63001 3.12149 3.15534 3.31626 3.61138 3.88209 4.03260 4.08102 4.14503 4.22527 4.31681 4.37237 4.49338 4.68297 4.71993 4.76597 4.87275 4.89602 4.96150 5.03090 5.06234 5.12424 5.21514 5.26423 5.28797 5.34535 5.44686 5.51049 5.73070 5.84513 6.02746 6.25841 6.43370 6.84778 7.37209 8.91223 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054835 B = 0.004158 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.499102 B = 6732.094146 C = 7073.159666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.688 5.688 13 C 0.095 3.905 14 C -0.104 4.104 15 C -0.114 4.114 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.157 4.157 19 C -0.169 4.169 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.342 0.658 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -20.561 0.937 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.320 5.320 13 C -0.034 4.034 14 C -0.104 4.104 15 C -0.133 4.133 16 C -0.217 4.217 17 C -0.217 4.217 18 C -0.194 4.194 19 C -0.206 4.206 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.009 0.991 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.162 0.838 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.330 -20.445 0.258 21.130 hybrid contribution -0.414 1.101 0.874 1.465 sum 4.916 -19.344 1.132 19.991 Atomic orbital electron populations 1.70109 1.07839 1.27739 1.51789 1.26009 0.95797 1.03460 0.94674 0.85368 0.79061 0.78599 0.77838 1.18572 1.20294 1.20262 1.21729 0.93561 0.92381 1.50428 0.92212 1.18979 0.94437 0.93169 0.94746 1.21363 0.97997 0.92818 1.00730 1.21820 0.93993 0.90303 0.99563 1.60513 1.19929 1.01367 1.50233 1.21356 0.94718 0.87261 1.00040 1.20839 0.89184 0.93229 1.07165 1.21663 0.91130 0.94730 1.05768 1.23024 1.00721 1.03410 0.94520 1.23032 1.00715 1.03357 0.94570 1.22951 0.98916 1.03238 0.94321 1.23030 0.99636 1.03060 0.94886 0.92749 0.99050 0.99094 0.93128 0.92838 0.92093 0.96022 0.83781 0.91324 0.95127 0.86466 0.89584 0.87460 0.89656 0.87455 0.88176 0.88964 0.89217 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.88 5.41 30.59 0.17 -3.72 16 11 C 0.07 2.58 5.69 86.30 0.49 3.07 16 12 N -0.69 -20.12 5.42 -513.90 -2.78 -22.91 16 13 C 0.10 2.40 4.88 86.30 0.42 2.82 16 14 C -0.10 -2.16 2.51 -52.18 -0.13 -2.29 16 15 C -0.11 -1.99 5.85 -10.77 -0.06 -2.06 16 16 C -0.18 -3.03 9.92 30.60 0.30 -2.73 16 17 C -0.18 -2.99 9.92 30.62 0.30 -2.68 16 18 C -0.16 -3.26 9.64 30.59 0.29 -2.96 16 19 C -0.17 -3.27 9.60 30.60 0.29 -2.97 16 20 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.34 9.40 6.62 -89.69 -0.59 8.81 16 28 H 0.07 1.81 6.90 -2.39 -0.02 1.79 16 29 H 0.03 0.78 6.91 -2.39 -0.02 0.76 16 30 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.09 1.64 6.75 -2.39 -0.02 1.63 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.60 6.76 -2.39 -0.02 1.58 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.27 7.58 -2.39 -0.02 2.25 16 37 H 0.09 1.83 6.35 -2.39 -0.02 1.82 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.39 306.00 2.87 -60.52 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.42 Total: 16.16 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.92 Total: -43.19 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.50 Total: -80.45 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.39 2.87 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236168210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.267 kcal (2) G-P(sol) polarization free energy of solvation -63.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds