Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99644 * 2 1 4 4 H 1.48500 * 109.47206 * 271.42542 * 3 2 1 5 5 H 1.48500 * 109.47242 * 31.43070 * 3 2 1 6 6 H 1.48507 * 109.46802 * 151.43037 * 3 2 1 7 7 C 1.37877 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 344.94123 * 7 2 1 9 9 C 1.50703 * 119.99864 * 164.66610 * 7 2 1 10 10 C 1.52997 * 109.51979 * 97.64548 * 9 7 2 11 11 C 1.54887 * 110.75785 * 73.76760 * 10 9 7 12 12 C 1.54265 * 104.19842 * 203.74078 * 11 10 9 13 13 C 1.53876 * 106.59687 * 23.60457 * 12 11 10 14 14 C 1.54272 * 106.60023 * 0.02562 * 13 12 11 15 15 C 1.53118 * 109.52144 * 337.52062 * 9 7 2 16 16 C 1.53173 * 109.20892 * 297.68654 * 15 9 7 17 17 N 1.46845 * 109.55584 * 300.86303 * 16 15 9 18 18 C 1.46847 * 111.20163 * 61.74016 * 17 16 15 19 19 C 1.53038 * 109.52479 * 298.26118 * 18 17 16 20 20 H 0.97002 * 120.00234 * 0.02562 * 1 2 3 21 21 H 1.09003 * 110.67104 * 197.19785 * 10 9 7 22 22 H 1.09000 * 110.48582 * 322.41643 * 11 10 9 23 23 H 1.08998 * 110.48885 * 85.05791 * 11 10 9 24 24 H 1.09000 * 110.03126 * 264.32439 * 12 11 10 25 25 H 1.08999 * 110.03315 * 142.89109 * 12 11 10 26 26 H 1.08999 * 110.03539 * 240.71751 * 13 12 11 27 27 H 1.09001 * 110.03054 * 119.28454 * 13 12 11 28 28 H 1.08993 * 110.48587 * 217.71133 * 14 13 12 29 29 H 1.09002 * 110.59822 * 95.12138 * 14 13 12 30 30 H 1.08994 * 109.50932 * 57.69074 * 15 9 7 31 31 H 1.09003 * 109.50047 * 177.81201 * 15 9 7 32 32 H 1.09001 * 109.44721 * 180.84163 * 16 15 9 33 33 H 1.08999 * 109.43542 * 60.88236 * 16 15 9 34 34 H 1.00898 * 111.00251 * 185.83570 * 17 16 15 35 35 H 1.08992 * 109.46612 * 178.24086 * 18 17 16 36 36 H 1.09013 * 109.44996 * 58.26474 * 18 17 16 37 37 H 1.09001 * 109.50049 * 299.23287 * 19 18 17 38 38 H 1.09000 * 109.53699 * 179.13550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4664 2.0640 -1.3996 5 1 1.4619 2.6438 0.7301 6 1 3.5614 1.4317 0.6696 7 6 2.0045 -1.1940 -0.0005 8 1 1.4923 -2.1134 0.2421 9 6 3.4713 -1.2170 -0.3457 10 6 4.2991 -1.2266 0.9409 11 6 4.2347 -2.6149 1.6248 12 6 4.5491 -2.3218 3.1064 13 6 4.1910 -0.8449 3.3479 14 6 3.6708 -0.2922 2.0048 15 6 3.8223 0.0241 -1.1708 16 6 3.0350 -0.0047 -2.4843 17 7 3.3700 -1.2236 -3.2316 18 6 2.9986 -2.4277 -2.4775 19 6 3.7845 -2.4720 -1.1651 20 1 -0.4850 0.8400 -0.0004 21 1 5.3311 -0.9412 0.7366 22 1 3.2377 -3.0438 1.5241 23 1 4.9834 -3.2841 1.2011 24 1 5.6087 -2.4859 3.3027 25 1 3.9460 -2.9623 3.7499 26 1 5.0767 -0.2923 3.6614 27 1 3.4141 -0.7686 4.1086 28 1 4.0085 0.7337 1.8580 29 1 2.5828 -0.3443 1.9642 30 1 3.5619 0.9207 -0.6083 31 1 4.8906 0.0270 -1.3872 32 1 3.2933 0.8698 -3.0815 33 1 1.9669 0.0062 -2.2673 34 1 2.9368 -1.2197 -4.1428 35 1 3.2303 -3.3130 -3.0697 36 1 1.9305 -2.4052 -2.2606 37 1 4.8522 -2.5084 -1.3814 38 1 3.4977 -3.3578 -0.5982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = 33.575642 kcal Electronic energy + Delta-G solvation = -17168.568174 eV Core-core repulsion = 14818.910968 eV Total energy + Delta-G solvation = -2349.657206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21406 -36.40534 -32.93500 -31.41905 -30.33718 -27.91288 -27.01249 -24.99570 -22.49517 -22.20242 -19.33382 -19.30452 -18.30355 -16.50244 -15.92005 -15.10746 -14.62744 -14.17530 -13.64042 -13.33975 -13.02023 -12.63918 -12.52423 -12.02870 -11.89371 -11.37111 -11.10669 -10.96176 -10.56929 -10.47218 -10.28401 -9.99239 -9.93215 -9.88282 -9.68878 -9.06281 -9.02588 -8.76465 -8.39264 -8.06496 -7.57815 -6.10446 -3.99766 3.27802 3.35216 3.47607 4.38907 5.00730 5.17038 5.39080 5.46902 5.52137 5.83025 5.86311 5.99704 6.14096 6.23732 6.24857 6.31445 6.34404 6.41547 6.47089 6.51886 6.58167 6.63802 6.65467 6.71732 6.82018 6.94949 7.02678 7.05932 7.09736 7.14896 7.29942 7.37119 7.60437 7.82451 7.87226 8.14077 8.55917 8.96184 9.55813 11.01790 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.016349 C = 0.012250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.047250 B = 1712.282865 C = 2285.216060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.884 3.116 4 H -0.294 1.294 5 H -0.317 1.317 6 H -0.236 1.236 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.051 3.949 10 C -0.075 4.075 11 C -0.108 4.108 12 C -0.122 4.122 13 C -0.124 4.124 14 C -0.137 4.137 15 C -0.128 4.128 16 C 0.061 3.939 17 N -0.690 5.690 18 C 0.065 3.935 19 C -0.090 4.090 20 H 0.262 0.738 21 H 0.043 0.957 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.327 0.673 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -1.921 0.187 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.722 3.278 4 H -0.223 1.223 5 H -0.248 1.248 6 H -0.165 1.165 7 C -0.531 4.531 8 H 0.090 0.910 9 C 0.050 3.950 10 C -0.094 4.094 11 C -0.146 4.146 12 C -0.159 4.159 13 C -0.162 4.162 14 C -0.173 4.173 15 C -0.164 4.164 16 C -0.068 4.068 17 N -0.320 5.320 18 C -0.064 4.064 19 C -0.128 4.128 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.808 -1.851 0.415 8.036 hybrid contribution -0.535 1.026 -0.113 1.163 sum 7.274 -0.825 0.302 7.326 Atomic orbital electron populations 1.69967 1.06454 1.26857 1.50048 1.25127 0.94489 0.98866 0.94468 0.87441 0.79269 0.83530 0.77539 1.22283 1.24803 1.16516 1.20708 0.91137 0.94812 1.46488 0.91008 1.18526 0.95814 0.90692 0.89996 1.22207 0.96763 0.93980 0.96428 1.22307 1.01175 0.97649 0.93437 1.22111 0.99453 0.96554 0.97817 1.22161 0.99386 0.95678 0.98937 1.23170 1.03906 0.97891 0.92375 1.22233 0.98822 0.99542 0.95812 1.22020 0.99768 0.90746 0.94250 1.60401 1.63540 1.02772 1.05326 1.21826 0.99305 0.90709 0.94562 1.21506 0.97391 0.98980 0.94878 0.92845 0.93900 0.90839 0.93439 0.93305 0.92934 0.93535 0.92939 0.92280 0.88094 0.93131 0.93012 0.93341 0.92594 0.85754 0.93283 0.93441 0.94142 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.07 1.92 3.50 -17.82 -0.06 1.86 16 3 Si 0.88 21.36 20.77 -169.99 -3.53 17.82 16 4 H -0.29 -7.02 5.92 56.52 0.33 -6.69 16 5 H -0.32 -8.03 7.11 56.52 0.40 -7.63 16 6 H -0.24 -5.29 3.35 56.52 0.19 -5.10 16 7 C -0.49 -12.61 5.00 -34.44 -0.17 -12.78 16 8 H 0.07 2.04 7.98 -52.49 -0.42 1.62 16 9 C 0.05 1.11 0.29 -155.54 -0.05 1.06 16 10 C -0.07 -1.52 2.36 -88.62 -0.21 -1.73 16 11 C -0.11 -1.98 4.73 -25.07 -0.12 -2.09 16 12 C -0.12 -2.00 6.80 -25.61 -0.17 -2.18 16 13 C -0.12 -2.17 6.80 -25.61 -0.17 -2.34 16 14 C -0.14 -2.84 4.11 -25.06 -0.10 -2.94 16 15 C -0.13 -2.82 3.96 -26.58 -0.11 -2.93 16 16 C 0.06 1.32 4.72 -3.76 -0.02 1.30 16 17 N -0.69 -13.31 6.85 -113.74 -0.78 -14.09 16 18 C 0.07 1.27 6.34 -3.83 -0.02 1.25 16 19 C -0.09 -1.80 4.32 -26.65 -0.12 -1.91 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.04 0.84 8.06 -51.93 -0.42 0.43 16 22 H 0.07 1.46 7.11 -51.93 -0.37 1.09 16 23 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.24 5.41 -51.93 -0.28 0.95 16 29 H 0.10 2.39 4.90 -51.93 -0.25 2.14 16 30 H 0.05 1.17 0.89 -51.93 -0.05 1.13 16 31 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 32 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 33 H 0.06 1.37 5.63 -51.93 -0.29 1.08 16 34 H 0.33 5.51 8.90 -39.29 -0.35 5.16 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.05 7.31 -51.92 -0.38 0.68 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.09 6.84 -51.93 -0.35 0.74 16 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -27.37 255.29 -7.38 -34.76 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.37 Total: 6.44 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.32 Total: -23.42 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.01 Total: -39.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -3.53 Total: 17.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.37 -7.38 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.333 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds