Wall clock time and date at job start Mon Mar 30 2020 02:53:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86807 * 119.99644 * 2 1
4 4 H 1.48500 * 109.47206 * 271.42542 * 3 2 1
5 5 H 1.48500 * 109.47242 * 31.43070 * 3 2 1
6 6 H 1.48507 * 109.46802 * 151.43037 * 3 2 1
7 7 C 1.37877 * 120.00121 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99592 * 344.94123 * 7 2 1
9 9 C 1.50703 * 119.99864 * 164.66610 * 7 2 1
10 10 C 1.52997 * 109.51979 * 97.64548 * 9 7 2
11 11 C 1.54887 * 110.75785 * 73.76760 * 10 9 7
12 12 C 1.54265 * 104.19842 * 203.74078 * 11 10 9
13 13 C 1.53876 * 106.59687 * 23.60457 * 12 11 10
14 14 C 1.54272 * 106.60023 * 0.02562 * 13 12 11
15 15 C 1.53118 * 109.52144 * 337.52062 * 9 7 2
16 16 C 1.53173 * 109.20892 * 297.68654 * 15 9 7
17 17 N 1.46845 * 109.55584 * 300.86303 * 16 15 9
18 18 C 1.46847 * 111.20163 * 61.74016 * 17 16 15
19 19 C 1.53038 * 109.52479 * 298.26118 * 18 17 16
20 20 H 0.97002 * 120.00234 * 0.02562 * 1 2 3
21 21 H 1.09003 * 110.67104 * 197.19785 * 10 9 7
22 22 H 1.09000 * 110.48582 * 322.41643 * 11 10 9
23 23 H 1.08998 * 110.48885 * 85.05791 * 11 10 9
24 24 H 1.09000 * 110.03126 * 264.32439 * 12 11 10
25 25 H 1.08999 * 110.03315 * 142.89109 * 12 11 10
26 26 H 1.08999 * 110.03539 * 240.71751 * 13 12 11
27 27 H 1.09001 * 110.03054 * 119.28454 * 13 12 11
28 28 H 1.08993 * 110.48587 * 217.71133 * 14 13 12
29 29 H 1.09002 * 110.59822 * 95.12138 * 14 13 12
30 30 H 1.08994 * 109.50932 * 57.69074 * 15 9 7
31 31 H 1.09003 * 109.50047 * 177.81201 * 15 9 7
32 32 H 1.09001 * 109.44721 * 180.84163 * 16 15 9
33 33 H 1.08999 * 109.43542 * 60.88236 * 16 15 9
34 34 H 1.00898 * 111.00251 * 185.83570 * 17 16 15
35 35 H 1.08992 * 109.46612 * 178.24086 * 18 17 16
36 36 H 1.09013 * 109.44996 * 58.26474 * 18 17 16
37 37 H 1.09001 * 109.50049 * 299.23287 * 19 18 17
38 38 H 1.09000 * 109.53699 * 179.13550 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4664 2.0640 -1.3996
5 1 1.4619 2.6438 0.7301
6 1 3.5614 1.4317 0.6696
7 6 2.0045 -1.1940 -0.0005
8 1 1.4923 -2.1134 0.2421
9 6 3.4713 -1.2170 -0.3457
10 6 4.2991 -1.2266 0.9409
11 6 4.2347 -2.6149 1.6248
12 6 4.5491 -2.3218 3.1064
13 6 4.1910 -0.8449 3.3479
14 6 3.6708 -0.2922 2.0048
15 6 3.8223 0.0241 -1.1708
16 6 3.0350 -0.0047 -2.4843
17 7 3.3700 -1.2236 -3.2316
18 6 2.9986 -2.4277 -2.4775
19 6 3.7845 -2.4720 -1.1651
20 1 -0.4850 0.8400 -0.0004
21 1 5.3311 -0.9412 0.7366
22 1 3.2377 -3.0438 1.5241
23 1 4.9834 -3.2841 1.2011
24 1 5.6087 -2.4859 3.3027
25 1 3.9460 -2.9623 3.7499
26 1 5.0767 -0.2923 3.6614
27 1 3.4141 -0.7686 4.1086
28 1 4.0085 0.7337 1.8580
29 1 2.5828 -0.3443 1.9642
30 1 3.5619 0.9207 -0.6083
31 1 4.8906 0.0270 -1.3872
32 1 3.2933 0.8698 -3.0815
33 1 1.9669 0.0062 -2.2673
34 1 2.9368 -1.2197 -4.1428
35 1 3.2303 -3.3130 -3.0697
36 1 1.9305 -2.4052 -2.2606
37 1 4.8522 -2.5084 -1.3814
38 1 3.4977 -3.3578 -0.5982
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238543358.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:43
Heat of formation + Delta-G solvation = 33.575642 kcal
Electronic energy + Delta-G solvation = -17168.568174 eV
Core-core repulsion = 14818.910968 eV
Total energy + Delta-G solvation = -2349.657206 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.21406 -36.40534 -32.93500 -31.41905 -30.33718 -27.91288 -27.01249 -24.99570
-22.49517 -22.20242 -19.33382 -19.30452 -18.30355 -16.50244 -15.92005 -15.10746
-14.62744 -14.17530 -13.64042 -13.33975 -13.02023 -12.63918 -12.52423 -12.02870
-11.89371 -11.37111 -11.10669 -10.96176 -10.56929 -10.47218 -10.28401 -9.99239
-9.93215 -9.88282 -9.68878 -9.06281 -9.02588 -8.76465 -8.39264 -8.06496
-7.57815 -6.10446 -3.99766 3.27802 3.35216 3.47607 4.38907 5.00730
5.17038 5.39080 5.46902 5.52137 5.83025 5.86311 5.99704 6.14096
6.23732 6.24857 6.31445 6.34404 6.41547 6.47089 6.51886 6.58167
6.63802 6.65467 6.71732 6.82018 6.94949 7.02678 7.05932 7.09736
7.14896 7.29942 7.37119 7.60437 7.82451 7.87226 8.14077 8.55917
8.96184 9.55813 11.01790
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.024007 B = 0.016349 C = 0.012250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.047250 B = 1712.282865 C = 2285.216060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.072 3.928
3 Si 0.884 3.116
4 H -0.294 1.294
5 H -0.317 1.317
6 H -0.236 1.236
7 C -0.494 4.494
8 H 0.072 0.928
9 C 0.051 3.949
10 C -0.075 4.075
11 C -0.108 4.108
12 C -0.122 4.122
13 C -0.124 4.124
14 C -0.137 4.137
15 C -0.128 4.128
16 C 0.061 3.939
17 N -0.690 5.690
18 C 0.065 3.935
19 C -0.090 4.090
20 H 0.262 0.738
21 H 0.043 0.957
22 H 0.073 0.927
23 H 0.047 0.953
24 H 0.048 0.952
25 H 0.052 0.948
26 H 0.046 0.954
27 H 0.052 0.948
28 H 0.059 0.941
29 H 0.101 0.899
30 H 0.052 0.948
31 H 0.051 0.949
32 H 0.048 0.952
33 H 0.056 0.944
34 H 0.327 0.673
35 H 0.049 0.951
36 H 0.047 0.953
37 H 0.040 0.960
38 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.347 -1.921 0.187 7.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.130 4.130
3 Si 0.722 3.278
4 H -0.223 1.223
5 H -0.248 1.248
6 H -0.165 1.165
7 C -0.531 4.531
8 H 0.090 0.910
9 C 0.050 3.950
10 C -0.094 4.094
11 C -0.146 4.146
12 C -0.159 4.159
13 C -0.162 4.162
14 C -0.173 4.173
15 C -0.164 4.164
16 C -0.068 4.068
17 N -0.320 5.320
18 C -0.064 4.064
19 C -0.128 4.128
20 H 0.072 0.928
21 H 0.061 0.939
22 H 0.092 0.908
23 H 0.066 0.934
24 H 0.067 0.933
25 H 0.071 0.929
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.119 0.881
30 H 0.069 0.931
31 H 0.070 0.930
32 H 0.067 0.933
33 H 0.074 0.926
34 H 0.142 0.858
35 H 0.067 0.933
36 H 0.066 0.934
37 H 0.059 0.941
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 7.808 -1.851 0.415 8.036
hybrid contribution -0.535 1.026 -0.113 1.163
sum 7.274 -0.825 0.302 7.326
Atomic orbital electron populations
1.69967 1.06454 1.26857 1.50048 1.25127 0.94489 0.98866 0.94468
0.87441 0.79269 0.83530 0.77539 1.22283 1.24803 1.16516 1.20708
0.91137 0.94812 1.46488 0.91008 1.18526 0.95814 0.90692 0.89996
1.22207 0.96763 0.93980 0.96428 1.22307 1.01175 0.97649 0.93437
1.22111 0.99453 0.96554 0.97817 1.22161 0.99386 0.95678 0.98937
1.23170 1.03906 0.97891 0.92375 1.22233 0.98822 0.99542 0.95812
1.22020 0.99768 0.90746 0.94250 1.60401 1.63540 1.02772 1.05326
1.21826 0.99305 0.90709 0.94562 1.21506 0.97391 0.98980 0.94878
0.92845 0.93900 0.90839 0.93439 0.93305 0.92934 0.93535 0.92939
0.92280 0.88094 0.93131 0.93012 0.93341 0.92594 0.85754 0.93283
0.93441 0.94142 0.92584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.13 13.96 55.43 0.77 -25.36 16
2 C 0.07 1.92 3.50 -17.82 -0.06 1.86 16
3 Si 0.88 21.36 20.77 -169.99 -3.53 17.82 16
4 H -0.29 -7.02 5.92 56.52 0.33 -6.69 16
5 H -0.32 -8.03 7.11 56.52 0.40 -7.63 16
6 H -0.24 -5.29 3.35 56.52 0.19 -5.10 16
7 C -0.49 -12.61 5.00 -34.44 -0.17 -12.78 16
8 H 0.07 2.04 7.98 -52.49 -0.42 1.62 16
9 C 0.05 1.11 0.29 -155.54 -0.05 1.06 16
10 C -0.07 -1.52 2.36 -88.62 -0.21 -1.73 16
11 C -0.11 -1.98 4.73 -25.07 -0.12 -2.09 16
12 C -0.12 -2.00 6.80 -25.61 -0.17 -2.18 16
13 C -0.12 -2.17 6.80 -25.61 -0.17 -2.34 16
14 C -0.14 -2.84 4.11 -25.06 -0.10 -2.94 16
15 C -0.13 -2.82 3.96 -26.58 -0.11 -2.93 16
16 C 0.06 1.32 4.72 -3.76 -0.02 1.30 16
17 N -0.69 -13.31 6.85 -113.74 -0.78 -14.09 16
18 C 0.07 1.27 6.34 -3.83 -0.02 1.25 16
19 C -0.09 -1.80 4.32 -26.65 -0.12 -1.91 16
20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
21 H 0.04 0.84 8.06 -51.93 -0.42 0.43 16
22 H 0.07 1.46 7.11 -51.93 -0.37 1.09 16
23 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16
24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.06 1.24 5.41 -51.93 -0.28 0.95 16
29 H 0.10 2.39 4.90 -51.93 -0.25 2.14 16
30 H 0.05 1.17 0.89 -51.93 -0.05 1.13 16
31 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16
32 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16
33 H 0.06 1.37 5.63 -51.93 -0.29 1.08 16
34 H 0.33 5.51 8.90 -39.29 -0.35 5.16 16
35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.05 1.05 7.31 -51.92 -0.38 0.68 16
37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.06 1.09 6.84 -51.93 -0.35 0.74 16
LS Contribution 255.29 15.07 3.85 3.85
Total: -1.00 -27.37 255.29 -7.38 -34.76
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -6.37 Total: 6.44 kcal
Atomic # 6 Polarization: -22.10 SS G_CDS: -1.32 Total: -23.42 kcal
Atomic # 7 Polarization: -39.44 SS G_CDS: -0.01 Total: -39.45 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -3.53 Total: 17.82 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -27.37 -7.38 -34.76 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238543358.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.333 kcal
(2) G-P(sol) polarization free energy of solvation -27.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.959 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds