Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99644 * 2 1 4 4 H 1.48500 * 109.47206 * 271.42542 * 3 2 1 5 5 H 1.48500 * 109.47242 * 31.43070 * 3 2 1 6 6 H 1.48507 * 109.46802 * 151.43037 * 3 2 1 7 7 C 1.37877 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 344.94123 * 7 2 1 9 9 C 1.50703 * 119.99864 * 164.66610 * 7 2 1 10 10 C 1.52997 * 109.51979 * 97.64548 * 9 7 2 11 11 C 1.54887 * 110.75785 * 73.76760 * 10 9 7 12 12 C 1.54265 * 104.19842 * 203.74078 * 11 10 9 13 13 C 1.53876 * 106.59687 * 23.60457 * 12 11 10 14 14 C 1.54272 * 106.60023 * 0.02562 * 13 12 11 15 15 C 1.53118 * 109.52144 * 337.52062 * 9 7 2 16 16 C 1.53173 * 109.20892 * 297.68654 * 15 9 7 17 17 N 1.46845 * 109.55584 * 300.86303 * 16 15 9 18 18 C 1.46847 * 111.20163 * 61.74016 * 17 16 15 19 19 C 1.53038 * 109.52479 * 298.26118 * 18 17 16 20 20 H 0.97002 * 120.00234 * 0.02562 * 1 2 3 21 21 H 1.09003 * 110.67104 * 197.19785 * 10 9 7 22 22 H 1.09000 * 110.48582 * 322.41643 * 11 10 9 23 23 H 1.08998 * 110.48885 * 85.05791 * 11 10 9 24 24 H 1.09000 * 110.03126 * 264.32439 * 12 11 10 25 25 H 1.08999 * 110.03315 * 142.89109 * 12 11 10 26 26 H 1.08999 * 110.03539 * 240.71751 * 13 12 11 27 27 H 1.09001 * 110.03054 * 119.28454 * 13 12 11 28 28 H 1.08993 * 110.48587 * 217.71133 * 14 13 12 29 29 H 1.09002 * 110.59822 * 95.12138 * 14 13 12 30 30 H 1.08994 * 109.50932 * 57.69074 * 15 9 7 31 31 H 1.09003 * 109.50047 * 177.81201 * 15 9 7 32 32 H 1.09001 * 109.44721 * 180.84163 * 16 15 9 33 33 H 1.08999 * 109.43542 * 60.88236 * 16 15 9 34 34 H 1.00898 * 111.00251 * 185.83570 * 17 16 15 35 35 H 1.08992 * 109.46612 * 178.24086 * 18 17 16 36 36 H 1.09013 * 109.44996 * 58.26474 * 18 17 16 37 37 H 1.09001 * 109.50049 * 299.23287 * 19 18 17 38 38 H 1.09000 * 109.53699 * 179.13550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4664 2.0640 -1.3996 5 1 1.4619 2.6438 0.7301 6 1 3.5614 1.4317 0.6696 7 6 2.0045 -1.1940 -0.0005 8 1 1.4923 -2.1134 0.2421 9 6 3.4713 -1.2170 -0.3457 10 6 4.2991 -1.2266 0.9409 11 6 4.2347 -2.6149 1.6248 12 6 4.5491 -2.3218 3.1064 13 6 4.1910 -0.8449 3.3479 14 6 3.6708 -0.2922 2.0048 15 6 3.8223 0.0241 -1.1708 16 6 3.0350 -0.0047 -2.4843 17 7 3.3700 -1.2236 -3.2316 18 6 2.9986 -2.4277 -2.4775 19 6 3.7845 -2.4720 -1.1651 20 1 -0.4850 0.8400 -0.0004 21 1 5.3311 -0.9412 0.7366 22 1 3.2377 -3.0438 1.5241 23 1 4.9834 -3.2841 1.2011 24 1 5.6087 -2.4859 3.3027 25 1 3.9460 -2.9623 3.7499 26 1 5.0767 -0.2923 3.6614 27 1 3.4141 -0.7686 4.1086 28 1 4.0085 0.7337 1.8580 29 1 2.5828 -0.3443 1.9642 30 1 3.5619 0.9207 -0.6083 31 1 4.8906 0.0270 -1.3872 32 1 3.2933 0.8698 -3.0815 33 1 1.9669 0.0062 -2.2673 34 1 2.9368 -1.2197 -4.1428 35 1 3.2303 -3.3130 -3.0697 36 1 1.9305 -2.4052 -2.2606 37 1 4.8522 -2.5084 -1.3814 38 1 3.4977 -3.3578 -0.5982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238543358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = 14.378350 kcal Electronic energy + Delta-G solvation = -17169.400631 eV Core-core repulsion = 14818.910968 eV Total energy + Delta-G solvation = -2350.489663 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89414 -37.93693 -34.77810 -33.23664 -32.03603 -29.42983 -28.52715 -27.00226 -24.15028 -23.87369 -20.93406 -20.74973 -20.14711 -18.24686 -17.83671 -16.64293 -16.30461 -15.79592 -15.34483 -15.14128 -14.74611 -14.31201 -14.12249 -13.70453 -13.57659 -13.14753 -12.77080 -12.53238 -12.28186 -12.05655 -11.90414 -11.79833 -11.63123 -11.47553 -11.12369 -10.78152 -10.69209 -10.55373 -10.38288 -9.86595 -9.26418 -8.22434 -6.11523 1.33635 1.36589 1.50092 2.37363 3.14491 3.40732 3.87873 4.02941 4.06993 4.18775 4.21458 4.38278 4.52025 4.60738 4.75412 4.81038 4.82844 4.87012 4.94833 5.00644 5.02819 5.07152 5.18281 5.20901 5.23606 5.29814 5.35375 5.43597 5.49045 5.59464 5.65400 5.74474 5.87305 5.99014 6.15950 6.46778 6.63900 6.87009 7.46749 8.94024 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.016349 C = 0.012250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.047250 B = 1712.282865 C = 2285.216060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.026 3.974 3 Si 0.926 3.074 4 H -0.288 1.288 5 H -0.339 1.339 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.028 0.972 9 C 0.046 3.954 10 C -0.077 4.077 11 C -0.105 4.105 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.142 4.142 15 C -0.132 4.132 16 C 0.062 3.938 17 N -0.678 5.678 18 C 0.066 3.934 19 C -0.087 4.087 20 H 0.256 0.744 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.018 0.982 34 H 0.342 0.658 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.061 0.939 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -2.262 0.134 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.169 4.169 3 Si 0.763 3.237 4 H -0.217 1.217 5 H -0.271 1.271 6 H -0.128 1.128 7 C -0.507 4.507 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.095 4.095 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.179 4.179 15 C -0.168 4.168 16 C -0.068 4.068 17 N -0.309 5.309 18 C -0.063 4.063 19 C -0.125 4.125 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.301 -2.213 0.349 11.521 hybrid contribution -1.658 1.027 -0.124 1.954 sum 9.643 -1.186 0.225 9.719 Atomic orbital electron populations 1.70112 1.08393 1.27134 1.53462 1.25704 0.94720 1.01866 0.94642 0.86810 0.79529 0.79524 0.77810 1.21683 1.27140 1.12754 1.20777 0.93159 0.92624 1.44140 0.95393 1.18571 0.93356 0.92041 0.91551 1.22194 0.97082 0.95148 0.95112 1.22249 1.00325 0.96765 0.94957 1.22101 1.01308 0.95727 0.96350 1.22151 1.00263 0.96623 0.96906 1.23071 1.01609 0.98200 0.94996 1.22268 1.00098 0.98776 0.95700 1.21935 0.97479 0.92451 0.94928 1.60416 1.63051 1.01674 1.05711 1.21816 0.96980 0.92177 0.95314 1.21478 0.98576 0.97887 0.94594 0.93459 0.91892 0.93687 0.91244 0.90539 0.92319 0.91154 0.92988 0.92456 0.91932 0.94082 0.90745 0.91844 0.96386 0.84062 0.90063 0.97258 0.92002 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 2 C 0.03 1.47 3.50 84.66 0.30 1.77 16 3 Si 0.93 44.46 20.77 68.60 1.43 45.89 16 4 H -0.29 -13.43 5.92 99.48 0.59 -12.84 16 5 H -0.34 -17.35 7.11 99.48 0.71 -16.65 16 6 H -0.20 -8.48 3.35 99.48 0.33 -8.15 16 7 C -0.47 -24.65 5.00 25.60 0.13 -24.53 16 8 H 0.03 1.68 7.98 -2.91 -0.02 1.66 16 9 C 0.05 1.94 0.29 -52.85 -0.02 1.92 16 10 C -0.08 -2.89 2.36 -9.50 -0.02 -2.91 16 11 C -0.11 -3.58 4.73 31.67 0.15 -3.43 16 12 C -0.12 -3.44 6.80 31.32 0.21 -3.23 16 13 C -0.12 -3.91 6.80 31.32 0.21 -3.70 16 14 C -0.14 -5.64 4.11 31.68 0.13 -5.51 16 15 C -0.13 -5.51 3.96 30.69 0.12 -5.39 16 16 C 0.06 2.57 4.72 86.37 0.41 2.98 16 17 N -0.68 -24.54 6.85 -513.76 -3.52 -28.06 16 18 C 0.07 2.50 6.34 86.33 0.55 3.04 16 19 C -0.09 -3.31 4.32 30.65 0.13 -3.18 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H 0.06 2.18 8.06 -2.39 -0.02 2.16 16 22 H 0.04 1.77 7.11 -2.39 -0.02 1.75 16 23 H 0.07 2.04 8.09 -2.39 -0.02 2.03 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.25 5.41 -2.39 -0.01 2.24 16 29 H 0.06 2.99 4.90 -2.39 -0.01 2.98 16 30 H 0.04 1.82 0.89 -2.39 0.00 1.82 16 31 H 0.07 2.79 8.13 -2.39 -0.02 2.77 16 32 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 33 H 0.02 0.89 5.63 -2.39 -0.01 0.88 16 34 H 0.34 10.76 8.90 -89.70 -0.80 9.96 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.01 0.41 7.31 -2.38 -0.02 0.39 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 2.12 6.84 -2.39 -0.02 2.10 16 Total: -1.00 -61.21 255.29 0.26 -60.95 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.25 Total: 21.66 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 2.30 Total: -42.15 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.22 Total: -86.35 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.43 Total: 45.89 kcal Total: -61.21 0.26 -60.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.329 kcal (2) G-P(sol) polarization free energy of solvation -61.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds