Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99666 * 2 1 4 4 H 1.48504 * 109.46631 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46948 * 299.99389 * 3 2 1 6 6 H 1.48495 * 109.47398 * 60.00023 * 3 2 1 7 7 C 1.37877 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99688 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46810 * 180.02562 * 9 7 2 11 11 C 1.46866 * 111.02673 * 294.33303 * 10 9 7 12 12 C 1.53079 * 109.60184 * 174.33043 * 11 10 9 13 13 C 1.53052 * 109.19640 * 58.91562 * 12 11 10 14 14 H 1.08992 * 109.42109 * 61.82087 * 13 12 11 15 15 C 1.52821 * 109.73870 * 181.71257 * 13 12 11 16 16 C 1.52986 * 109.63714 * 60.46035 * 15 13 12 17 17 C 1.53023 * 109.35695 * 59.92566 * 16 15 13 18 18 C 1.52954 * 109.41009 * 299.74623 * 17 16 15 19 19 C 1.53042 * 109.59186 * 60.23219 * 18 17 16 20 20 H 1.09001 * 110.00340 * 60.87423 * 19 18 17 21 21 C 1.46861 * 110.99629 * 170.00107 * 10 9 7 22 22 H 0.96999 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47140 * 59.99917 * 9 7 2 24 24 H 1.09007 * 109.46998 * 299.99573 * 9 7 2 25 25 H 1.08997 * 109.44530 * 54.28661 * 11 10 9 26 26 H 1.09004 * 109.42177 * 294.35205 * 11 10 9 27 27 H 1.08992 * 109.51625 * 298.99394 * 12 11 10 28 28 H 1.08997 * 109.51427 * 178.82770 * 12 11 10 29 29 H 1.08996 * 109.44511 * 180.50867 * 15 13 12 30 30 H 1.09003 * 109.44826 * 300.44345 * 15 13 12 31 31 H 1.08998 * 109.49101 * 179.89526 * 16 15 13 32 32 H 1.09000 * 109.49008 * 299.93598 * 16 15 13 33 33 H 1.08999 * 109.48238 * 59.72739 * 17 16 15 34 34 H 1.09000 * 109.48197 * 179.75019 * 17 16 15 35 35 H 1.08998 * 109.45006 * 300.19746 * 18 17 16 36 36 H 1.08994 * 109.45053 * 180.27056 * 18 17 16 37 37 H 1.09002 * 109.49208 * 66.04922 * 21 10 9 38 38 H 1.09002 * 109.48862 * 306.00574 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9785 -3.6497 -1.2467 12 6 4.0561 -4.7329 -1.1543 13 6 3.3884 -6.0869 -0.9023 14 1 2.7342 -6.3297 -1.7395 15 6 4.4563 -7.1715 -0.7654 16 6 5.3731 -6.8443 0.4148 17 6 4.5432 -6.7794 1.6988 18 6 3.4818 -5.6865 1.5634 19 6 2.5616 -6.0081 0.3836 20 1 2.0571 -6.9594 0.5528 21 6 1.5212 -4.8930 0.2399 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 3.4507 -2.6806 -1.4077 26 1 2.3115 -3.8714 -2.0799 27 1 4.7343 -4.5027 -0.3327 28 1 4.6151 -4.7710 -2.0892 29 1 3.9754 -8.1347 -0.5952 30 1 5.0464 -7.2173 -1.6808 31 1 6.1325 -7.6202 0.5114 32 1 5.8559 -5.8821 0.2444 33 1 4.0564 -7.7402 1.8660 34 1 5.1952 -6.5508 2.5419 35 1 3.9691 -4.7265 1.3924 36 1 2.8934 -5.6364 2.4795 37 1 0.8635 -5.1154 -0.6004 38 1 0.9322 -4.8250 1.1546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250846097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = -26.906050 kcal Electronic energy + Delta-G solvation = -16232.780938 eV Core-core repulsion = 13880.501049 eV Total energy + Delta-G solvation = -2352.279889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75833 -35.87951 -32.77364 -31.86660 -30.80118 -28.86643 -26.76590 -23.86913 -22.75019 -21.86086 -21.21574 -20.23919 -17.55303 -16.28302 -15.32302 -15.14496 -14.53110 -14.21444 -14.01911 -13.50486 -13.31281 -12.63000 -12.52333 -12.31919 -11.91978 -11.73171 -11.57971 -11.16118 -10.96791 -10.77743 -10.73297 -10.55265 -10.43040 -10.15525 -9.93406 -9.65524 -9.58675 -9.38635 -9.04891 -8.40547 -7.10655 -5.99730 -4.00666 3.32441 3.39748 3.44673 4.45136 4.87177 4.93016 4.97485 5.10489 5.36042 5.39929 5.54476 5.57734 5.61499 5.71530 5.77611 5.85678 5.94223 6.07006 6.13483 6.15780 6.23003 6.28422 6.33299 6.36996 6.44991 6.54099 6.61183 6.71034 6.81307 6.84626 7.02191 7.38013 7.42438 7.85440 8.16242 8.30035 8.62792 9.07897 9.63525 11.11274 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044308 B = 0.006899 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.792919 B = 4057.829861 C = 4162.474124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.532 5.532 11 C 0.065 3.935 12 C -0.114 4.114 13 C -0.083 4.083 14 H 0.059 0.941 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.075 4.075 20 H 0.060 0.940 21 C 0.059 3.941 22 H 0.260 0.740 23 H -0.012 1.012 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.015 0.985 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -13.090 -0.258 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.257 5.257 11 C -0.064 4.064 12 C -0.151 4.151 13 C -0.102 4.102 14 H 0.078 0.922 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.094 4.094 20 H 0.079 0.921 21 C -0.070 4.070 22 H 0.070 0.930 23 H 0.006 0.994 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.939 -12.885 0.128 15.135 hybrid contribution -0.354 0.802 -0.708 1.127 sum 7.585 -12.083 -0.580 14.279 Atomic orbital electron populations 1.69972 1.06069 1.26573 1.51353 1.24997 0.94845 0.99295 0.95577 0.86467 0.80097 0.83547 0.77466 1.19667 1.21164 1.21046 1.21217 0.93512 0.89971 1.49555 0.91823 1.19702 0.90132 0.87511 0.95918 1.61974 1.27501 1.02481 1.33730 1.21937 0.94959 0.98864 0.90595 1.21760 0.98365 0.94058 1.00948 1.21107 0.96412 0.95201 0.97432 0.92247 1.21488 0.97179 0.98212 0.97934 1.21555 0.97584 1.01426 0.95131 1.21552 0.97854 0.99203 0.97005 1.21490 0.96478 0.99387 0.97111 1.21179 0.95883 0.97323 0.94983 0.92136 1.22073 0.94570 0.90690 0.99679 0.93047 0.99378 0.95314 0.90073 0.96675 0.90862 0.92835 0.92623 0.92575 0.92956 0.91555 0.92881 0.92618 0.89744 0.92723 0.96383 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.50 -14.28 8.43 -34.44 -0.29 -14.57 16 8 H 0.06 1.79 7.11 -52.49 -0.37 1.41 16 9 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 10 N -0.53 -11.56 3.85 -235.95 -0.91 -12.46 16 11 C 0.06 1.29 5.30 -3.80 -0.02 1.27 16 12 C -0.11 -1.79 4.74 -26.66 -0.13 -1.92 16 13 C -0.08 -1.18 2.47 -90.64 -0.22 -1.41 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.11 -1.31 5.44 -26.83 -0.15 -1.46 16 16 C -0.12 -1.39 5.66 -26.73 -0.15 -1.54 16 17 C -0.12 -1.44 5.92 -26.74 -0.16 -1.60 16 18 C -0.11 -1.59 4.77 -26.73 -0.13 -1.71 16 19 C -0.07 -1.13 2.56 -90.46 -0.23 -1.37 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 C 0.06 1.09 4.90 -3.75 -0.02 1.07 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H -0.01 -0.33 8.13 -51.93 -0.42 -0.75 16 24 H 0.03 0.81 7.99 -51.92 -0.41 0.40 16 25 H 0.08 1.75 6.69 -51.93 -0.35 1.40 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 1.18 4.88 -51.93 -0.25 0.93 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.45 5.92 -51.93 -0.31 1.14 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 LS Contribution 281.41 15.07 4.24 4.24 Total: -1.00 -29.14 281.41 -9.22 -38.36 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.65 Total: -3.88 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.61 Total: -16.71 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.17 Total: -38.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.14 -9.22 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250846097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.458 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds